Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01014 ATGGGCTCTGCCGATGAGATTGGACTACCGCTCCAATTCGACGTCGAAGACACTATATTCGTTGCTGTGGGCACCGATGTTGACGACGCCAAAGCTACTCTCGTTTGGGCTGTCCAAAACTTCGCCGGCAAAATTTTTTGTCTGCTTCACGTTTATCACCTTCCTCCCAAAAATGAAGAGCCATCTTCCTATACACTAAAAGAACATGTAGGGCAGGCATTTGAGGAACCAGAAAGGCAAAAGCCTTTTGAACTTCTTAATCAATATGTTCTCATACTTGCCAAACTGGGGGTACAAGCCCAGAAAGTATGGATTGAGACGAACAACGTTGAGAGAGGGATTGTTGAAATTATTGCTCAGTACAGTATTAAATGGCTAGTCATGGGCTTAGACACAGAAAGATACAATATGAAGAGGTCTATCGGGTTGAAGTCCAAGAAAGCTTTCTATGTATCCCAGCAAGCACCAATATGGTGTCACATATGGTTTGTCTGCAGAGGGCGCCTTATATACTCAAGGGAGGGCAGAATGGGAAGATCAAAAAGTTCGGAAGTAGGAATCAACTATACCGACCATCTTAAACCAGAGTCTGTAACTTGTAAGAACTTTGCAGATGCTCAAGAAAAGGAGAATGCGGGTGATAGGATAAGCAGGTTTAGATATCAAGGTTTGGTGGATCAGAAACTTTACAATAATGGGGACCTGGGCACTTCAAGGACAACGCTATTGTTAAAGAATGAGGGAGTAAAAGAGGGACATCCAGTTAGCCAGAGTGGTTTGCAAGAAGCCTCGATGAATGGTAAATCCATAAAAGACTTTGAGGGAGTGAAGGCTTGGGTAGAGAAAGATACTGTGGGTGCTGAATTCAAGGCTGAATCATTAGAAAGCTCGTGTATGGAGGAGGTGAAGAAAAGAAAAGAGATGGAAGAACTTTTAGAGAAAGAGAAAAAGGAAGTGGAACGGATGAACAAAGAGCGTGATGGGCTTTTGGAAGAACTACAACATGTCGAAGAACAGAAATCAGTACTTGAGAGAAAAGCTTCAGAGTACCAGTCTGATATGGAGGAGCTGGAGAAGAAGATGTTTGCAGCTGTTGATCTTTTAGTGAGTTTCAAGGAGAAGCGAGATAAATTGCTGATAGAGCGTGAAGGTGCAATGGACAAGCTTCGAAAGCTGAAGAATATTGTTAAAAGGGAACCTTCACGCTATCACAATGCAGAAATGCCTATGTTCTCCTTCGTAGAAATAATTGAAGCAACGAGAAACTTTGACCCTTCCTGGAAGATTGGTGAGGGAAGACATGGCAGTGTTTATAAAGGCCTCCTTCGTCACATGGATGTCGCTCTAAAAATGTTTCCTTCGTATGGTTCTCATTCCCAATCAGCATTTCAATATGAGCAGGTTGAGGTCTTGAGTAGGGTTAGGCATCCCAACCTGGTTTCAATTATTGGAGCATGTCCAGAATCTAGGTTAATAGTGTATGAAAATTTAAAAAATGGAAGTTTGGAAGATCACCTTGCCTGCAAAAATCACAATTGCCCACTTCCATGGCAGACACGGATTCGCATTGCTGCTGATATCTGCTCAGCCCTTATATTTCTTCATTACAGCGACCCTTGCATTGTCCACGGGGATATAAAACCAAGCAAAATCCTACTTGATACCAATTTTATTGCCAAACTAGGTGGTCTGGGCATCTCTCGTTTGATCCCGCAAGAAGAGAAGGCCTTTAATTCGGCCTCAGTATGTAATATATCGAAAGAAAATAATCCATATATAGATCCTGAATATCTTGAGACGGGAAAGTTCACTTCAGAATCAGATGTCTACTCTGTTGGTGTTATTTTGCTGCGAATTTTAACTGGCAGAACACCTCCGGGTATAGTAAAAGATGTAAAATGTGCTATAGAAAATGACAACATTGTTGTCGTTTTAGACTCATCAGCTGGAGACTGGCCACATGATCTAGCAGAGCAATTAGCTCTTGTGGCATTGAGGTGCTGCGAGAAGGAAAAGTTGGATCGGCCTGACCTTGTCTCAGAATTATGGTGTGTTTTGGAGCCAATGAGATCCATTGCCTCAGCATCATGTTCGAGTCTGAAGAAACACTCTCGAGTGCCTGCACATTTTACGTGTCCGATTTTTCAGGAAATTATGAAAGATCCACTAATTGCTGCAGATGGATTCACATACGAAGCTGATGCAATAAGAGGATGGTTCCAAAGTGGCCACAACACTTCTCCGATGACAAATCTTAAACTTGAGCACTGTAATCTTGTACCAAATTATGCTCTTCTGAATGCAATTCAAGAGTGGCAGCATCAGCTATGA 2331 42.3 MGSADEIGLPLQFDVEDTIFVAVGTDVDDAKATLVWAVQNFAGKIFCLLHVYHLPPKNEEPSSYTLKEHVGQAFEEPERQKPFELLNQYVLILAKLGVQAQKVWIETNNVERGIVEIIAQYSIKWLVMGLDTERYNMKRSIGLKSKKAFYVSQQAPIWCHIWFVCRGRLIYSREGRMGRSKSSEVGINYTDHLKPESVTCKNFADAQEKENAGDRISRFRYQGLVDQKLYNNGDLGTSRTTLLLKNEGVKEGHPVSQSGLQEASMNGKSIKDFEGVKAWVEKDTVGAEFKAESLESSCMEEVKKRKEMEELLEKEKKEVERMNKERDGLLEELQHVEEQKSVLERKASEYQSDMEELEKKMFAAVDLLVSFKEKRDKLLIEREGAMDKLRKLKNIVKREPSRYHNAEMPMFSFVEIIEATRNFDPSWKIGEGRHGSVYKGLLRHMDVALKMFPSYGSHSQSAFQYEQVEVLSRVRHPNLVSIIGACPESRLIVYENLKNGSLEDHLACKNHNCPLPWQTRIRIAADICSALIFLHYSDPCIVHGDIKPSKILLDTNFIAKLGGLGISRLIPQEEKAFNSASVCNISKENNPYIDPEYLETGKFTSESDVYSVGVILLRILTGRTPPGIVKDVKCAIENDNIVVVLDSSAGDWPHDLAEQLALVALRCCEKEKLDRPDLVSELWCVLEPMRSIASASCSSLKKHSRVPAHFTCPIFQEIMKDPLIAADGFTYEADAIRGWFQSGHNTSPMTNLKLEHCNLVPNYALLNAIQEWQHQL 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7297120 7310751 + MELO3C006923.2.1 Cme06g01014 330163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01014 776 Gene3D HUPs 11 132 IPR014729 -
Cme06g01014 776 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 13 774 - -
Cme06g01014 776 CDD RING-Ubox_WDSUB1_like 710 751 - -
Cme06g01014 776 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 706 776 IPR013083 -
Cme06g01014 776 Gene3D Transferase(Phosphotransferase) domain 1 497 705 - -
Cme06g01014 776 Gene3D Phosphorylase Kinase; domain 1 402 496 - -
Cme06g01014 776 CDD STK_N 18 167 - -
Cme06g01014 776 Pfam Protein tyrosine and serine/threonine kinase 428 678 IPR001245 GO:0004672|GO:0006468
Cme06g01014 776 SUPERFAMILY RING/U-box 704 775 - -
Cme06g01014 776 ProSiteProfiles U-box domain profile. 705 776 IPR003613 GO:0004842|GO:0016567
Cme06g01014 776 SUPERFAMILY Protein kinase-like (PK-like) 403 679 IPR011009 -
Cme06g01014 776 Coils Coil 375 395 - -
Cme06g01014 776 SMART Ubox_2 709 772 IPR003613 GO:0004842|GO:0016567
Cme06g01014 776 ProSiteProfiles Protein kinase domain profile. 423 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01014 776 Pfam U-box domain 706 774 IPR003613 GO:0004842|GO:0016567
Cme06g01014 776 PANTHER OS02G0152300 PROTEIN 13 774 - -
Cme06g01014 776 ProSitePatterns Protein kinases ATP-binding region signature. 429 450 IPR017441 GO:0005524
Cme06g01014 776 Coils Coil 291 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01014 - - - csv:101211339 1439.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme06g01014 Cme09g01573 CCT
Cme06g01014 Cme09g01573 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01014 Cme-Chr6:7297120 Cme11g02163 Cme-Chr11:29014598 1.19E-158 dispersed
Cme09g01574 Cme-Chr9:20668953 Cme06g01014 Cme-Chr6:7297120 3.47E-14 transposed
Cme06g00175 Cme-Chr6:1068850 Cme06g01014 Cme-Chr6:7297120 9.06E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g716 . . . . . . . . . Cmo18g01279 . . . . . . Cpe14g00102 Bhi01g01293 . . . . . . Cla01g00450 . . . . . . . . . . Lsi05g01216 . Chy09g01031 Cme06g01014 . . . . . . . . . . . . Cma18g01253 Car16g00105 Car18g01163 Cpe09g00082 Cpe13g00095 . . . . . . . . . . . . . . . Csa03g01725 . Cme09g01573
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001162 3 11 1 3 3 1 4 0 0 2 1 1 3 2 1 2 1 4 4 1 2 2 2 2 2 1 2 5 3 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64950 PF07714 PK_Tyr_Ser-Thr 8.00E-34 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01014 Cme_Chr06 FPKM 0.940322 1.03868 0.697646 0.818854 0.677579 0.654643 0.585766 1.938581 1.815983 1.888084
Cme06g01014 Cme_Chr00 FPKM 0.969413 0.79517 0.702662 0.77253 0.630298 0.605984 0.594715 1.820295 1.234734 1.418902
Cme06g01014 Cme_Chr00 FPKM 0.870561 1.302267 0.671727 0.41367 0.481022 0.531144 0.464891 1.236457 1.825296 1.560047