Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01016 ATGCCAGTTGCAAAACTCAAGGCCTCTAACTATCCAGATGTGATGAAACCGGAGGAGGGAAATGATTCTCTAGACACTATTATTAGACAGGCAATCGGAAAAGAACCTTTTCTTTCTTTCTCAAGAGCTGGTGAGAGTCCAGTCCAGTGGATTCAACTACTTCATGCTCTCGACCAGCAAGAACTCCCAGGTTGGCCCTTGCTCTCTCCTTTAAAGATTCAAATGCAGAAGTGTGAGAAGTGTGCCCGGGAATTTTGCTCAGTTATCAATTATAGAAGACATATAAGAGTGCATCATAGGCTGAAAAAGCTTGATAAGGATTCTGCCAAAAGTAGGGATCTACTGGCAGCATTCTGGGACAAGCTAACCTGGGAAGAGACAAAGGAGGCTGTCTCATTTAAGAACGTTTCAATTGAGGGAATACAAGGGTCAGCCGTAATCAAGAATCTGACAGCTATCATTGGGAAACCAGGATTTTCTGCTCTACCACATGTCTATTTGAGGGCAGGTTCTGCCCTTTTGGATATTGTACAAGGTAGACCATCTAGGTTTCCACTATCTTCCCTGGAGTTATTTGAAATTCTTGACAATGCAAGCGAAAGAACCTTCCTATGTGGAACAGCTGTCTCGATGCAAAAATATATATTTGATGGAGATGCTGTAAAGATTGGTCTTGAAACTAAAAACTTAGTTGCTTGCATGAGCTTCTTGTTGGAAGAGAAATTGGTCAAAACATGGCTTGCTGATAAGGATGCCGAAGCTTTAAGGTGCCAAAAGTTACTGGTAGAGGAGGAAGAAGCTGCTCAAAGGAGACAAGCGGAGCTGTTGGAAAGAAAAAGGCAGAAGAAGCTGAGGCAGAAAGAACAAAGGTCAAAGGAGCAAAAACTTGAAGAGAAGGCTGATGTCGAGGGGAGTGTAGATGAAATGATTGAAGATGGGTTACTTGAAGAATCATCTAGCCCTCAGACTGAATGCCATTCAGAAAGGGACTCTCTGGGGATATTGCCTGATCATACTCCATCTTCAATTGAAACATCTCAACATTCTCTAACTGATGAAGATGAAGAATCCGAGTCTCATTCTGGGTTTCATAATGGCTACCCCGAACATCTTCCTGCTGATCACAATGGTGAACAGCAGAAGATACAAATGAATGGCCATAAGCATGTAATCTCCCAGTGGCAGGCATTGCCTAAGACACAAAGAGGACTTTCTAATGGTTTTCGTGCAGATCAGAATTATCAGGGACTCAAAAATGGAGATATGCGAAGGCATGGAAGCCATGTGCAATCAAGGGCCGCACCTATTATTAATGGGAAAAAGGTATGGAGCCGGAAGCCAAAGCCAGAAAGAGATGGAGATCGTTTCCAGGCCAGGATACAGGAAGAGGCAACGACCCGGGCAGAGGAAATTAAGAGCCATGAAGTTTTGATAGGTTCTATTTCAGTGGCATTAGGAAATTGCAATCAAGAGAGTAAATATCCAGTTGGAACCCCAGATGATTACCAGGACGATCATCAAACACCTAAGAAGATCAATAATCATTTGGAGAAATTCATTAAGCCGGATTCAATTCAAACTGCAACAAATCGGGTGATGATTAAGCTTTGGAGGCCAGTTAGTCGTAACGGAACCAAATATGCGATGCCAGATCAAAGTGAAAATGGCGAGTCTGAAGCTGAAGTGACAACTGAAAAGCTAGAGGATCAGGCCCTTCTGAATGTATATTCTCCTCATTCCTTGGATGGTGACACTGGAGACTTTGGAAACGACTCTTTTATCCAGGAAGAACCTGCACAACCAGTTGGCTTGGAGTTCTCTAGTCTTGCTGCAAAAGCTTTCCTTGCACAAAGGTGGAAGGAGGCCATAACAGCCGATCACGTGAAATTGAATCTACCCTCAGATTCTGAATCTTCTGGATGTTTTCAATTGCAAAATGACAATGAAACCAACGTTGACAGACGCATTGTTAATAATGGCAATACAATTTTGATAAACTTGGAGGCTCCCAAGTCCTCAACAAATGAAGCTGCTGGCAAGACCACCACCAAGTTCAGGACAAAATTTGAAAAGGGTGCGAAGATAAAGTACATTCCCAAACTTCGAACTACTACTACTACCACCTAA 2127 42.83 MPVAKLKASNYPDVMKPEEGNDSLDTIIRQAIGKEPFLSFSRAGESPVQWIQLLHALDQQELPGWPLLSPLKIQMQKCEKCAREFCSVINYRRHIRVHHRLKKLDKDSAKSRDLLAAFWDKLTWEETKEAVSFKNVSIEGIQGSAVIKNLTAIIGKPGFSALPHVYLRAGSALLDIVQGRPSRFPLSSLELFEILDNASERTFLCGTAVSMQKYIFDGDAVKIGLETKNLVACMSFLLEEKLVKTWLADKDAEALRCQKLLVEEEEAAQRRQAELLERKRQKKLRQKEQRSKEQKLEEKADVEGSVDEMIEDGLLEESSSPQTECHSERDSLGILPDHTPSSIETSQHSLTDEDEESESHSGFHNGYPEHLPADHNGEQQKIQMNGHKHVISQWQALPKTQRGLSNGFRADQNYQGLKNGDMRRHGSHVQSRAAPIINGKKVWSRKPKPERDGDRFQARIQEEATTRAEEIKSHEVLIGSISVALGNCNQESKYPVGTPDDYQDDHQTPKKINNHLEKFIKPDSIQTATNRVMIKLWRPVSRNGTKYAMPDQSENGESEAEVTTEKLEDQALLNVYSPHSLDGDTGDFGNDSFIQEEPAQPVGLEFSSLAAKAFLAQRWKEAITADHVKLNLPSDSESSGCFQLQNDNETNVDRRIVNNGNTILINLEAPKSSTNEAAGKTTTKFRTKFEKGAKIKYIPKLRTTTTTT 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7312624 7318028 + MELO3C006924.2.1 Cme06g01016 330165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01016 708 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Cme06g01016 708 MobiDBLite consensus disorder prediction 545 564 - -
Cme06g01016 708 Coils Coil 273 299 - -
Cme06g01016 708 MobiDBLite consensus disorder prediction 279 375 - -
Cme06g01016 708 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 704 - -
Cme06g01016 708 MobiDBLite consensus disorder prediction 348 363 - -
Cme06g01016 708 MobiDBLite consensus disorder prediction 279 303 - -
Cme06g01016 708 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01016 - - - csv:101211090 1330.47
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g717 . . . . . . . . Cmo16g00127 Cmo18g01282 . . . . . . Cpe14g00101 Bhi01g01291 . . . . . . . . . . . . . Cone1ag1169 . . . Lsi05g01215 . . Cme06g01016 . . . . . . . . . . . Cma16g00117 Cma18g01255 Car16g00104 Car18g01165 Cpe09g00080 . . . . . . . . . . . . . . . . Csa03g01726 Chy06g00956 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001162 3 11 1 3 3 1 4 0 0 2 1 1 3 2 1 2 1 4 4 1 2 2 2 2 2 1 2 5 3 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41490 None None None None Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01016 Cme_Chr06 FPKM 1.261704 1.550103 2.11774 2.401469 3.980707 3.493168 4.275539 4.356695 3.837688 3.853306
Cme06g01016 Cme_Chr00 FPKM 1.244207 1.258183 2.568658 3.03534 5.096374 4.179852 5.11159 5.106474 4.322446 4.584471
Cme06g01016 Cme_Chr00 FPKM 0.673231 0.743714 2.31627 2.367227 4.327521 2.500278 3.406124 3.207247 2.110704 2.773364
Cme06g01016 Cme_Chr00 FPKM 0.299426 0.903345 0.0 1.983113 0.0 0.0 2.797553 3.283865 2.286183 1.955636
Cme06g01016 Cme_Chr00 FPKM 1.602049 1.423451 2.516083 3.310722 5.495544 5.483248 6.080688 5.949542 5.86125 5.689768