Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01017 ATGCCTTCATGGTGGGGGAAGTCATCCAAAGACGTGAAGAAGAAAACGAGCAAAGAAAGTTTCATCGACTCGTTACACCGAAAGTTTAGAAATTCACCTGATGGTAAAGTAAACAGCAGATCAGGAAGTTCTCGTAAACGTGGTGGTGACACTGTATCTGAGAAGGGGTCCAAATCACCAATATCAAGATCACCATCACCTTCCAAAGAAGTAGTTAGATGTCAAAGTTTTGCTGAAAGATCGCATTCTCACAAACTTCCACTTCCAGATTTGCGACCTGTAGGTGTAGGTCGCACAGATTCTGGGATTAGTGTGACAGCAAAATCCAAATTAGAGAGAAGCTCCAAGACATCCTCATTCCTACCCCTCCCTAGACCTGCTTGTATTCGTAGTAGGCCAGATCCTGCAGATTTGGATGGAGATTTGGTTACTGGTTCGGTCTTTGGTGAGTCATCAAGTGATAGTGATGATCCCAATGATTCACGTCAACGTAGTCCTCCGGCAACTGACTATGACATTGGGGCTATAACTGTGATAGGTTCTACTGAACCTAGTGAAACTCTCAAAGATCAGTCTCCTACTGTCGTGCAAATAAATTTAAAAGAAGGCAAGAAAGCGGAAAATCTTCCATTTCCTCATAAGCATTCTTCAATACCTAAACGGAGGCCTTTAAGCAGCAACGTAACAAATCTACAAGTTCCTCGTCATGGGGCCTTCTTTAGCGCACCAGATAGTTCTATGTCTAGTCCCTCTAGAAGTCCTATGAGGATATTTAGCACTGAGCAAGTAATGAACGCCGCTGTTTGGGCTGGAAAATCTCATCCAGATGTCATTTTGGGTGGATCTGGTCATTGTTCTAGCCCGGGTTCTGGTCACAATTCAGGGCACAACTCTATGGGAGGTGATATGGCGGGCCACTTCTTTTGGCAACAAAGTAGGGGTAGCCCCGAATATTCTCCTGTACCTAGTTCCAGAATGACTAGCCCCGGTCCTAGTTCCAGAATTCAAAGTGGTGCTGTCACACCTATTCATCCTAGAGCAGGAGCTCCACCTGCTGAGTCACAAACATGCTGGCCTGATGAGAAACAAACCCATCGTTTGCCTCTTCCTCCCATAGCAATCTCAATCTCTTCTCCATTTTCACATTCAAATTCGGCAGTGACATCTCCTTCAGTGCCTAGGAGTCCAGGAAGGACAGATACTCCAGCAAGTCCAGGTCCACGCTGGAAAAAGGGGAAGCTGCTGGGTCGGGGCACATTTGGGCATGTATATGTCGGTTTTAATAGCGAAAGTGGAGAGATGTGTGCAATGAAGGAGGTCACGTTATTTTCTGATGATGCAAAGTCTAGGGAAAGTACTAAACAATTGATGCAGGAAATTGCTTTACTCAGTCGTTTGAGGCATCCCAACATTGTGCAGTATTATGGTTCTGAAACAGTGGGTGATAAATTCTATATATATCTGGAATATGTATCTGGTGGTTCCATTTATAAATTACTTCAAGAGTATGGACAATTTGGGGAACTAGCAATCCGTAGCTATACTCAACAAATACTATCAGGACTTGCGTATTTGCATGCTAAAGCTACAGTGCACAGGGATATTAAAGGAGCAAACATACTTGTTGACCCAAATGGTCGTGTTAAACTGGCAGATTTTGGGATGGCGAAGCATATCACTGGTCAATCATGTCCACTATCGTTTAAGGGTAGCCCTTACTGGATGGCACCTGAGGTCATAAAGAACTCAAATGGTTGCAACCTTGCCGTTGATGTTTGGAGTCTTGGATGTACTGTTCTGGAGATGGCTACTACAAAGCCACCATGGAGCCAGTATGAAGGGGTTGCCGCGATGTTTAAGATTGGTAATAGCAAGGAACTCCCTGTAATTCCAGAGCACCTCTCAGATGATGGGAAGGATTTTGTTAGACTATGTCTGCAACGAAACCCACATCATCGACCTACAGCTGCTCAACTTTTGGAGCATCCTTTTGTCAAACATGCTGCACCTGTAGAGAGGCCTATTTTGAGCTCTGAACCTTCTGATACAACTCCTGGAGTTACAAACGGAGTGAAGATTTTGGGTATTAGTCAATCACGGACTACTTCTATGGACTCGGATGGTAGACTTGCGGTTCATTCTTCAAGAGTCTCAAAAGCTGTTCTTCATGCCAGTGAAATCAATATTTCCCGAAACATATCATGTCCTGTTTCGCCAATCGGAAGCCCTCTTTTGCATTCACGATCTCAACATCCTAGTGGAAGAATGTCTCCCTCACCCATTTCAAGTCCACGAACCATGTCAGGCTCATCCACACCTTTGACGGGATGTGGTGGTGCAATTCCTTACAACCACCTGAAACAGACTATATACTTGCAAGAGGGATTCTTAAGCGTGCCAAAATCCTTGAATAGCAGTCCATACAGCAGCGGTATCTCCTTCCATGATTCAAATCCCGATATTTTCCGAGGGTTGCAGCCTGGGGCTCACATCTTCTCTGAAATGATACCAGAAAACGATGTCTTGGGAAAGCAGATTGGACGGCCTGCTTACAGTGAGTTATATGATGGCCAACATGTCTTGGCCGACCGTGTGTCTCAGCAGCTCCTGAGGGATCATGTTAAAACAAGTCCTTCTCTTGATTTGAGTCCTAGCGCTACATTGTCCGGCCGCATGAATGGTATTTGA 2688 44.87 MPSWWGKSSKDVKKKTSKESFIDSLHRKFRNSPDGKVNSRSGSSRKRGGDTVSEKGSKSPISRSPSPSKEVVRCQSFAERSHSHKLPLPDLRPVGVGRTDSGISVTAKSKLERSSKTSSFLPLPRPACIRSRPDPADLDGDLVTGSVFGESSSDSDDPNDSRQRSPPATDYDIGAITVIGSTEPSETLKDQSPTVVQINLKEGKKAENLPFPHKHSSIPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRIFSTEQVMNAAVWAGKSHPDVILGGSGHCSSPGSGHNSGHNSMGGDMAGHFFWQQSRGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGAPPAESQTCWPDEKQTHRLPLPPIAISISSPFSHSNSAVTSPSVPRSPGRTDTPASPGPRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSRESTKQLMQEIALLSRLRHPNIVQYYGSETVGDKFYIYLEYVSGGSIYKLLQEYGQFGELAIRSYTQQILSGLAYLHAKATVHRDIKGANILVDPNGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDVWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPVIPEHLSDDGKDFVRLCLQRNPHHRPTAAQLLEHPFVKHAAPVERPILSSEPSDTTPGVTNGVKILGISQSRTTSMDSDGRLAVHSSRVSKAVLHASEINISRNISCPVSPIGSPLLHSRSQHPSGRMSPSPISSPRTMSGSSTPLTGCGGAIPYNHLKQTIYLQEGFLSVPKSLNSSPYSSGISFHDSNPDIFRGLQPGAHIFSEMIPENDVLGKQIGRPAYSELYDGQHVLADRVSQQLLRDHVKTSPSLDLSPSATLSGRMNGI 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7319721 7327357 - MELO3C006925.2.1 Cme06g01017 330166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01017 895 MobiDBLite consensus disorder prediction 55 71 - -
Cme06g01017 895 ProSiteProfiles Protein kinase domain profile. 409 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01017 895 MobiDBLite consensus disorder prediction 285 357 - -
Cme06g01017 895 Pfam Protein kinase domain 410 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01017 895 MobiDBLite consensus disorder prediction 1 173 - -
Cme06g01017 895 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Cme06g01017 895 MobiDBLite consensus disorder prediction 378 411 - -
Cme06g01017 895 MobiDBLite consensus disorder prediction 312 339 - -
Cme06g01017 895 MobiDBLite consensus disorder prediction 876 895 - -
Cme06g01017 895 Gene3D Transferase(Phosphotransferase) domain 1 408 684 - -
Cme06g01017 895 MobiDBLite consensus disorder prediction 743 771 - -
Cme06g01017 895 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 812 - -
Cme06g01017 895 MobiDBLite consensus disorder prediction 378 398 - -
Cme06g01017 895 SUPERFAMILY Protein kinase-like (PK-like) 407 743 IPR011009 -
Cme06g01017 895 CDD STKc_MEKK1_plant 408 665 - -
Cme06g01017 895 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 812 - -
Cme06g01017 895 MobiDBLite consensus disorder prediction 102 121 - -
Cme06g01017 895 MobiDBLite consensus disorder prediction 8 53 - -
Cme06g01017 895 SMART serkin_6 409 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01017 Cme-Chr6:7319721 Cme09g01564 Cme-Chr9:20609817 0 dispersed
Cme06g01017 Cme-Chr6:7319721 Cme08g00551 Cme-Chr8:3459611 2.56E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64951 PF00069 Pkinase 7.10E-71 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01017 K20717 - csv:101214961 1642.48