Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01021 ATGGCAGGTGATCTTCCTGAAGCTGTGAAAAAAGAGGAGAAAGAATTGAAGGTGAAAATCATAGGCAAGACCCATGTCAAACCCAACAAAAAACTTGGTACAAAACACTACCAATTGATCACATTTGACCTCCCTTATCTTGCCTTCTACTACAACCAAAAGCTCATCCTCTACGGCGACAATGGCGGGGAGGTGAAGTTCCCTGAGACGGTGGAGAAGCTTAAGGATGGCCTCGAGATGGTTCTTGAGCCATTCCATCAGCTTGCTGGGAGGTTGGGTAAGGATGAGGATGGAATTTTTAGAGTGGAGTATGATGATGATATGAAAGGCGTCGAGGTGGCTGAAGCTGTCGCCGAGGATGTCGCTTTAGCCGATTTGGTGGCAGAGGAAGGCACGGCTACACTCAAGGAGCTGATTCCTTACAATGGGATCCTCAACTTGGAAGGTCTTCAGAGGCCATTGTTGGCTGTTCAGATAACAAAGCTAAAGGACGGAATCGCAATGGGGTGCGCGTTCAATCACGCCGTACTCGATGGAACCGCCACGTGGCACTTTATGAGGTCATGGGCTGAGATCTGCCGTGGGGCCCAAGACATATCCGTCCCTCCATTTCTCGAGCGCACCAAGGCGCGCAACACACGAGTAAAGCTCGACATACCCCCTCCGCCACCGCAACCCTCCGCCGCCAATGGCGATTCGACGGCGCCGCCGCCGAAACCGCTAAAGGAGAAGGTCTTCAAATTCACAGAAACGGCCATTAACAAGATCAAATCAAAAGTGAACTCAGCAAATCCACCAACAACGGACGGCTCAACTCCATTCTCCACTTTCCAATCACTCTCCGTCCACGTATGGCGTCACGTCACACAGGCCCGAAACCTGAAGCCGGAAGACATCACCGTCTTCACCGTTTTCGCAGACTGCCGTAAACGCGTCGATCCGCCAATGCCGGAGAGCTACTTCGGAAACCTAATCCAAGCCATATTCACCGGGACTGCCGCGGGATTACTGCTGATGAATCCGGCGGAATTCGGGGCTGGAGTGATCCAGAAGGCAATCGTGTCACACGACGCAGCGGCGATCGATCAAAGGAACAAAGAATGGGAGAGTGCGCCGAAGATCTTCGAGTTCAAGGACGCTGGAATGAACTGTGTGGCGGTGGGGAGTTCACCGAGGTTTAAAGTGTATGAGGTGGATTTTGGATGGGGAAAACCGGAGAGCGTGAGGAGTGGATGTAATAATAGATTTGATGGGATGATGTATCTGTATCAAGGGAAGAATGGAGGAATAGATGTGGAGATAAGCTTGGAGGAAGAAGCTATGGCGAGGCTGGAGAAGGATAAGGAGTTTGTTGTGGAGAATAATTAG 1368 51.1 MAGDLPEAVKKEEKELKVKIIGKTHVKPNKKLGTKHYQLITFDLPYLAFYYNQKLILYGDNGGEVKFPETVEKLKDGLEMVLEPFHQLAGRLGKDEDGIFRVEYDDDMKGVEVAEAVAEDVALADLVAEEGTATLKELIPYNGILNLEGLQRPLLAVQITKLKDGIAMGCAFNHAVLDGTATWHFMRSWAEICRGAQDISVPPFLERTKARNTRVKLDIPPPPPQPSAANGDSTAPPPKPLKEKVFKFTETAINKIKSKVNSANPPTTDGSTPFSTFQSLSVHVWRHVTQARNLKPEDITVFTVFADCRKRVDPPMPESYFGNLIQAIFTGTAAGLLLMNPAEFGAGVIQKAIVSHDAAAIDQRNKEWESAPKIFEFKDAGMNCVAVGSSPRFKVYEVDFGWGKPESVRSGCNNRFDGMMYLYQGKNGGIDVEISLEEEAMARLEKDKEFVVENN 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7385038 7387481 - MELO3C006929.2.1 Cme06g01021 330170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01021 455 MobiDBLite consensus disorder prediction 217 233 - -
Cme06g01021 455 Gene3D - 14 221 IPR023213 -
Cme06g01021 455 Gene3D - 225 447 IPR023213 -
Cme06g01021 455 PANTHER BAHD ACYLTRANSFERASE DCR-RELATED 18 450 - -
Cme06g01021 455 MobiDBLite consensus disorder prediction 213 241 - -
Cme06g01021 455 Coils Coil 434 455 - -
Cme06g01021 455 Pfam Transferase family 16 450 - -
Cme06g01021 455 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 18 450 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01021 K19747 DCR; BAHD acyltransferase [EC:2.3.1.-] - csv:101214239 870.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01021 Cme-Chr6:7385038 Cme07g00340 Cme-Chr7:2165623 1.83E-63 dispersed
Cme12g00224 Cme-Chr12:2497762 Cme06g01021 Cme-Chr6:7385038 1.18E-27 dispersed
Cme12g00225 Cme-Chr12:2508730 Cme06g01021 Cme-Chr6:7385038 8.63E-20 dispersed
Cme06g01021 Cme-Chr6:7385038 Cme04g02699 Cme-Chr4:32453281 1.20E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g732 . . . . . . . . Cmo16g00121 . . . . . Sed07g1011 . Cpe14g00096 Bhi01g01274 Tan01g0219 Cmetu06g1581 . Hepe07g0139 Mch10g0139 . . . . . . . . . . . . Lsi05g01210 . . Cme06g01021 . . . . . . . . . . . Cma16g00110 . . . . . . . . . . . . Cla05g00898 Cam05g0982 Cec05g0987 Cco05g0985 Clacu05g0970 Cmu05g0927 Cre05g1011 . Csa03g01733 Chy06g00964 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008051 3 1 2 1 1 1 0 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01021 Cme_Chr06 FPKM 4.887708 5.89202 5.406567 6.345994 10.787155 9.745649 9.17005 7.113728 7.543914 7.936398
Cme06g01021 Cme_Chr00 FPKM 3.748003 3.384403 3.205218 3.441618 5.668929 5.541557 4.787026 3.82153 4.687359 3.88033