Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01057 ATGGCTTCAGCTGCTAATTCTTTGTTTTTGATTTTGGGTTTTGCATGGTTGATCCACGCTTGTATGGGCGGTCAAATTGGTATGAGATCAAGATTGTTTGCCAGTGATCAAAATCAAGTATGGCTTTCTGATAATCGTACATTTGCATTTGGATTTAGTCCAATTAACAACAGTGGTGACAATGTTAGCGATCGGTTTCTACTTGCTATTTGGTTTGCGGAGCTTCCAGGGGATCGTACCGTAATATGGTCAGCTAATAGAAACTCTCCAGTCTCCAAGAATGCGATTGTGGAGCTCGACGTCACCGGAAACCTCGTCCTCACCGACGGTGCTGCCGCCTCCGTCGTCTGGTCTTCCAACACCTCTGGTGATGGAGCAGAGTATGCTGTCATGTCGGAATCCGGAAATTTTATCCTCTTCAACGCCGAACGAATCCCTGTTTGGCAGAGCTTTTCACACCCTTCTGATACCCTTCTCCCAAATCAACCTCTATCGGTCTCTTTAGAGCTAACAACATCAAAATCCCCTTCCCATGGCGGATATTATACCCTAAAAATGCTCCAACAGCGCACCACTCTCAAACTTGCCTTGACCTTCAATTTGCCTGAAAGTTACGAGGGTTTGCCTGAATCTTACGCAAATTACTCGTACTGGTCCGCCCCTGAAATTTCCAATGTAACAGGGGAAGTCATCGCTGTTTTAGATGAAGGTGGAAGCTTCGGTGTGGTGTATGGTGACTCCTCTAATGGCGCGGTTTATGTTTACAAGAACGATAACGATAATGGGGGATTGTCAGCATCGACAAATCAGTCGATTCGTAATGTACGCACACAGGTTGTTCGACGATTGACCTTAGAGAGTAATGGGAACTTGCGTTTGTATCGCTGGGATGATGATGTCAATGGGTCTCGCCAATGGGTGCCAGAATGGGCGGCAGTTTCAAATCCTTGTGATATTGCTGGAATTTGTGGAAATGGGATTTGCTACTTGGATAAAAGCAAGACGAATGCGTCTTGCTCTTGCTTACCGGGGACTTTCAAGGACAACGGCGGCAGCCAGTGCTTTGAAAATTCATCGTCGGTGGGGAAATGTGGCGGCCAAAATCATCAATCTCCCCCTACTCAGTTCAGGATTTCTCCTGTTCAGCAAACAAATTATTATTACTCTGAGTTCTCTGTGATTGCAAACTACAGCGATATCAACACAGTATCCAAATGTGGTGATGCTTGCTTAACTGATTGTGAGTGTGTTGCTTCTGTTTATGGGCTTGATGATGAGAAGCCTTACTGTTGGGTGTTGAGAAGCTTAGATTTTGGCGGATTTGAGGATGCTGGTTCGACTCTGTTTGTTAAGGTCAAGTCTAATGGCTCAATACCAGAAGCCAATGGGCCAGGAGGTGGAGGAGATTCTTCAGGAAGTGAGAAAGAAAAGGCTACGGTAATTCCTATTGTTCTGAGTATGGCTTTTCTGATTGGGCTGCTGTGTCTGTTGTTATATTATAATGTTCGTAGAAGGAGAGCTATGAAGAGAGCCATGGAAAGCTCTCTCATCTTGTCTGGTGCTCCCATAAGTTTTAGCCACCGTGATTTGCAGGTCCGGACGAACAATTTCTCTGAGGTTCTTGGCACAGGGGGATTTGGTAGTGTATATAAGGGAAGCCTTGGAGATGGGACTCTTGTAGCTGTGAAGAAACTTGACAGAGTTTTTCCTCATGGAGAGAAAGAGTTTATAACTGAAGTTAACACAATTGGATCTATGCATCACATGAACTTGGTTCGGCTCTGCGGATACTGCTCTGAAGGATCACATAGGCTTCTAGTTTATGAGTTTATGAAAAATGGTTCATTGGACAAGTGGATATTTCCAACACATCATAATCAAGACAGAATTTTGGATTGGTCAACTCGGTTCCACATAGCAGTTTGCACGGCACAAGGGATTGCTTATTTCCATGAGCAATGCAGGAATAGGATCATACACTGTGATATCAAGCCAGAAAACATTCTGTTGGATGAAAACTTTTGTCCCAAAGAGATGAGAAATGGGACACATTTCAAAGTCGCAGATAGGAGACTAGAGGGTGCAGTGGAGGAAGAAGAGCTTATGAGAGCATTAAAAGTTGCATTTTGGTGCATTCAAGATGAAGTTGTCACGAGACCGACGATGGGTGACATTGTGAGGATGTTGGAAGGATCGATGGACGTCGACATGCCGCCAATGCCACAAACGGTGATGGAGCTGGTTGAGGAAGGGTTGGATCAAGTTTATAGAGCCATGAAAAGAGATATCAATCAGTCAAGCTCCTTCACCATCAATAGCCAACCTTCATCTTCTTTGGCTACCTGCAGCCATTCCACAATCTCTCCAAGATAG 2373 44.67 MASAANSLFLILGFAWLIHACMGGQIGMRSRLFASDQNQVWLSDNRTFAFGFSPINNSGDNVSDRFLLAIWFAELPGDRTVIWSANRNSPVSKNAIVELDVTGNLVLTDGAAASVVWSSNTSGDGAEYAVMSESGNFILFNAERIPVWQSFSHPSDTLLPNQPLSVSLELTTSKSPSHGGYYTLKMLQQRTTLKLALTFNLPESYEGLPESYANYSYWSAPEISNVTGEVIAVLDEGGSFGVVYGDSSNGAVYVYKNDNDNGGLSASTNQSIRNVRTQVVRRLTLESNGNLRLYRWDDDVNGSRQWVPEWAAVSNPCDIAGICGNGICYLDKSKTNASCSCLPGTFKDNGGSQCFENSSSVGKCGGQNHQSPPTQFRISPVQQTNYYYSEFSVIANYSDINTVSKCGDACLTDCECVASVYGLDDEKPYCWVLRSLDFGGFEDAGSTLFVKVKSNGSIPEANGPGGGGDSSGSEKEKATVIPIVLSMAFLIGLLCLLLYYNVRRRRAMKRAMESSLILSGAPISFSHRDLQVRTNNFSEVLGTGGFGSVYKGSLGDGTLVAVKKLDRVFPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPTHHNQDRILDWSTRFHIAVCTAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKEMRNGTHFKVADRRLEGAVEEEELMRALKVAFWCIQDEVVTRPTMGDIVRMLEGSMDVDMPPMPQTVMELVEEGLDQVYRAMKRDINQSSSFTINSQPSSSLATCSHSTISPR 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7684990 7690810 + MELO3C006961.2.1 Cme06g01057 330206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01057 790 MobiDBLite consensus disorder prediction 767 790 - -
Cme06g01057 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 658 670 IPR008271 GO:0004672|GO:0006468
Cme06g01057 790 Pfam D-mannose binding lectin 80 168 IPR001480 -
Cme06g01057 790 ProSiteProfiles Protein kinase domain profile. 535 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01057 790 SUPERFAMILY Protein kinase-like (PK-like) 515 677 IPR011009 -
Cme06g01057 790 PANTHER OS07G0415500 PROTEIN 7 677 - -
Cme06g01057 790 Pfam S-locus glycoprotein domain 270 344 IPR000858 GO:0048544
Cme06g01057 790 PANTHER OS07G0415500 PROTEIN 677 790 - -
Cme06g01057 790 Pfam Protein kinase domain 538 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01057 790 ProSitePatterns Protein kinases ATP-binding region signature. 541 564 IPR017441 GO:0005524
Cme06g01057 790 CDD B_lectin 37 154 IPR001480 -
Cme06g01057 790 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 187 IPR036426 -
Cme06g01057 790 SMART serkin_6 535 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01057 790 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 677 790 - -
Cme06g01057 790 Gene3D - 33 153 IPR036426 -
Cme06g01057 790 ProSiteProfiles Bulb-type lectin domain profile. 33 152 IPR001480 -
Cme06g01057 790 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 7 677 - -
Cme06g01057 790 Gene3D Transferase(Phosphotransferase) domain 1 678 747 - -
Cme06g01057 790 Gene3D Transferase(Phosphotransferase) domain 1 611 677 - -
Cme06g01057 790 Gene3D Phosphorylase Kinase; domain 1 499 610 - -
Cme06g01057 790 PIRSF SRK 677 781 IPR024171 GO:0004674
Cme06g01057 790 PIRSF SRK 1 678 IPR024171 GO:0004674
Cme06g01057 790 SMART blect_4 32 154 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01057 - - - csv:101209399 1321.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01057 Cme-Chr6:7684990 Cme03g01093 Cme-Chr3:20353179 6.73E-12 dispersed
Cme06g01057 Cme-Chr6:7684990 Cme03g01614 Cme-Chr3:25043411 1.31E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g816 . . . . . . . . . Cmo18g01317 . . . . . . . Bhi01g01427 . . . . . . . . . . . . . . . . . . . . Cme06g01057 . . . . . . . . . . . . Cma18g01288 . Car18g01206 . . . . . . . . . Cla05g00933 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008718 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64954 PF00069 Pkinase 1.80E-26 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01057 Cme_Chr06 FPKM 0.227063 0.0 5.078656 4.929505 2.436626 2.586136 2.578529 0.403381 0.486369 0.614803