Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01058 ATGGAAAATATGCAGTATGCCGAGGAGCTCGTGAGGGAGTTCCTTGTCTTTAGGGGGTTTACAAGTGCTCTTCAATCTTATGAAAGTGAGCTTAGCACAGATATTGGAAAAGGGTTCCAAGTGGACAGGATTTTAGATTTAATCTTTTCAGTTTATATACCCAAGTTTGAGGCAGAAAAGTTGGTGGGGCTACTTGGTTTTTTCAAGCAGTGCCTTGCTTCATCATCTGACAATACACTCCTTTCAACTGTGTCAAAATTGGAGGTTTCCATCCTTCGTTATTATATGGTACATGCCATACAATCAGGAAGGACAGATAAAGTTCTGGAGTTTCTTAAAATACATGGCAATGATCTACTGCAGAGGACTAAAGATTGGACTCCATGGTTTGCCCTACCATACCTAAAGAATTCAAAGTTTGATCCCAATTTTCGCGTTTATTTTACAAAGGAGTGGTATGAAGCGCTGCATGTTTCTGTAAGGAATTTCTTCAGTGAAGTCTTCAATGAACCACGCATTCCTGCCCTGCTAAAGCTCAGTTCAGAGAAGAATACAGTTAATCATCTGAAAAGAGATATCAAGCAGTTAAACCTTAAATTAGCTCAACTTCAGGCTTTATTGGAGGAAAAGGAAGCTCATCTTTGCAACTTAAGAAGCCTGGCGAACAGTTCTTCAAGTTTGATGCACGAAGAGAATGCTACTTCATCAAATGATGCTCAGGAGACTTGTCCCCCTCCAACTACACAAGTTGGGGAAACACAACTGGCTCGAGATGGGATTTTAGCTGGCTCTGACAAGTATACAGCTTCAAATGAAGATTCAAGTTCTTTGTTAACTAGTTGCTCAGGAGACGGTGAAGATCACATTTGTATGCATAATGTGCCAGTGAATAGCGGAGAAGTCCATGTACAAGAAGACTTTCCTGAAGTGAAAGTAGAATTTCAGGAGACATTTTTGGGCCACACAAGTCCAATCAGCCGTTGCCGTTTTTCTGCATCCGGAAACAATGTAGCAAGTGCTTCTTTGGATGGTACAGTCAGGATATGGACATATGACTCATCCACTCCAGCATCCAGAAATGCAACAATTTACTGTGGGGCAGAGATTATGTCACTTGATTGGGAGTGTAAATCTGATCGCCTTCTTCTAATAGGGACTGCTGATGCGGGGATTAAAGCATGGAACGTTGATGCAAAGAGAGTTGTGTGTGATCTCAACACGACCGATATGTTCCCTAGGTTCTATCGTGTGTTGGATATCAAATGCAGTCCTGTTGAATCTATTTTCGTCTCTGCAGCAGCATCTAGAGGGCATGGTACAAGTTATGTGGATGGTTTGGGGTTTGCTTCGCTCACAGTATGGAATATGAGAACTTGGAAGTCAATGTCAGTCCTTCCTTTGGGTAAGGATCCTCCTGCAATCACTTCAATGTGCTTCAATCATAATGGGAAGATCTTAGCAGCTGCTGCTACTGATGGAATGATTCACATGTTTGACATGTCTGCCTGTCTACAAATTACAGGGTGGCCGGCTCATGATTCTGCCATTAACTCGATTCTTTTTGGGACAGATGAAACTAGCATCTTTACCTTAGGGTCAGATGGGAAGATATTTGAATGGAGCTTGCATAATCAAGGTCAAGTTCTGTGGTCAAGAAATAATAGCAGGTTTTGCGATTCTGAGAGCTCTCTATCTTTGAGACATGAAATGGCTTTGGATGCAAATGGAAAAAGACTCTTGGCTACATCAAATTCTGTGAGAGCTCCCATATACCAGGTGGGTGGTCGTGTGGGCGGATTGAAAACTCTTCCACATACAGCAGCGATAACGACGGTTGATTGGCACCCAACTTTGCCTGTGTTCTTGACTGGATCTGCCGACCACTCAATTCGAGTTACGTCTATTTCTTGA 1911 42.39 MENMQYAEELVREFLVFRGFTSALQSYESELSTDIGKGFQVDRILDLIFSVYIPKFEAEKLVGLLGFFKQCLASSSDNTLLSTVSKLEVSILRYYMVHAIQSGRTDKVLEFLKIHGNDLLQRTKDWTPWFALPYLKNSKFDPNFRVYFTKEWYEALHVSVRNFFSEVFNEPRIPALLKLSSEKNTVNHLKRDIKQLNLKLAQLQALLEEKEAHLCNLRSLANSSSSLMHEENATSSNDAQETCPPPTTQVGETQLARDGILAGSDKYTASNEDSSSLLTSCSGDGEDHICMHNVPVNSGEVHVQEDFPEVKVEFQETFLGHTSPISRCRFSASGNNVASASLDGTVRIWTYDSSTPASRNATIYCGAEIMSLDWECKSDRLLLIGTADAGIKAWNVDAKRVVCDLNTTDMFPRFYRVLDIKCSPVESIFVSAAASRGHGTSYVDGLGFASLTVWNMRTWKSMSVLPLGKDPPAITSMCFNHNGKILAAAATDGMIHMFDMSACLQITGWPAHDSAINSILFGTDETSIFTLGSDGKIFEWSLHNQGQVLWSRNNSRFCDSESSLSLRHEMALDANGKRLLATSNSVRAPIYQVGGRVGGLKTLPHTAAITTVDWHPTLPVFLTGSADHSIRVTSIS 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7691533 7699920 + MELO3C006963.2.1 Cme06g01058 330207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01058 636 Gene3D - 265 441 IPR015943 GO:0005515
Cme06g01058 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 353 - -
Cme06g01058 636 SMART WD40_4 596 634 IPR001680 GO:0005515
Cme06g01058 636 SMART WD40_4 311 350 IPR001680 GO:0005515
Cme06g01058 636 SMART WD40_4 458 499 IPR001680 GO:0005515
Cme06g01058 636 SMART WD40_4 500 541 IPR001680 GO:0005515
Cme06g01058 636 SMART WD40_4 356 395 IPR001680 GO:0005515
Cme06g01058 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 602 636 - -
Cme06g01058 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 602 636 IPR001680 GO:0005515
Cme06g01058 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 359 IPR001680 GO:0005515
Cme06g01058 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 509 542 IPR001680 GO:0005515
Cme06g01058 636 PANTHER OS05G0299300 PROTEIN 1 635 - -
Cme06g01058 636 SUPERFAMILY WD40 repeat-like 276 635 IPR036322 GO:0005515
Cme06g01058 636 Pfam WD domain, G-beta repeat 602 632 IPR001680 GO:0005515
Cme06g01058 636 Pfam WD domain, G-beta repeat 471 499 IPR001680 GO:0005515
Cme06g01058 636 Pfam WD domain, G-beta repeat 316 349 IPR001680 GO:0005515
Cme06g01058 636 Coils Coil 179 213 - -
Cme06g01058 636 MobiDBLite consensus disorder prediction 226 248 - -
Cme06g01058 636 Gene3D - 442 636 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01058 K24760 WDR91; WD repeat-containing protein 91 - cmo:103484216 1216.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01058 Cme-Chr6:7691533 Cme04g00941 Cme-Chr4:12646236 1.71E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g823 . . Bda05g00106 . Bpe03g00248 . Bma10g01272 . Cmo16g00090 . . . . . Sed13g0100 . Cpe14g00070 Bhi01g01430 Tan01g0171 Cmetu06g1598 . Hepe07g0105 Mch10g0107 . . . . . . . . . . Cone14ag0043 . Lsi05g01174 . . Cme06g01058 Blo07g00355 . . . . . . . . . . . . Car16g00076 . . . . . . . . . . Cla05g00934 Cam05g1021 Cec05g1025 Cco05g1021 Clacu05g1010 Cmu05g0963 Cre05g1044 . Csa03g02177 Chy06g01279 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010151 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01058 Cme_Chr06 FPKM 0.0 0.21519 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.051502
Cme06g01058 Cme_Chr00 FPKM 0.068779 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.372348 0.376249