Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01065 ATGATGAAGAATAGCTTCATGTTCCTTGAAATTTTATTGTTTTTAGCATTTATCTGCCCGCGAGTTCTCACCGAGCCAGTTGAAGACAAGCAAGCCTTGCTTGATTTCTTCCATAATATCCCTCACTCCCCCTCTCTCAACTGGAATGAGAGTAGTTCTGTGTGCAAAGCCTGGACAGGAGTGTTTTGCAATTCTGATGAGTCTAGAGTAGTAGCCTTACGATTACCCGGGACTGGTCTGCGCGGTCCGATCCCTGTGAATACTCTTAGCCGTCTATCTGCGCTCGAGATTCTTAGCCTTAGGTTAAATAGGTTATCAGGTCCTTTCCCTTTTGATTTTTCGAAGCTGGGAAACTTGAGTTCCTTGTATCTGCAATATAACAAGTTTTCTGGTCCTTTGCCTTCAGATTTTTCAGTTTGGAATAACCTTAGTGTCATTGATCTATCAAACAATCTCTTTAATGGGAGTATTCCTTCCTCTATCTCAAAGTTGAGTCATTTGACAGTTCTGAATCTTGCAAACAACTCGTTTTCAGGCGAAATTCCGAACCTTGATATTCCAAGTTTGCAACGGTTAGATTTGTCCAATAATAATCTTACAGGAAATGTGCCTCACTCTCTTCAAAGATTTCCAAGTTGGGTGTTCTCTGGTAACAATGTTACTGAAGAACATAGTGCAATTCCCCCATCTTTTCCCCTCCAGCCTCCCACTGCTCAACCAACGAGAAAAGGCAAAGGGCTGAGTGAATCTGCAATACTTGGTATTGCAATTGGTGGTTCTGTTATTGGGTTTATTTTGCTAGCTGTTCTATTGACTGTTTGGTGGTTGAAAAAAGGGAAAGGAAATACGAGTCCCTCTATGGACCCCAAAAAGAAGGAAGCGTCTGTAAAAAAAAGGGGCTTTGAGAGCCAAGAACAAAAGAACAACCTCAATTTCTTTCAGGATTCTAATCTTGCATTTGACTTGGAAGACCTGTTGAGAGCATCTGCCGAGGTTCTTGGGAAGGGAACCTTTGGAGTGAGCTACAAGGCAGCTTTGGAGGACTCAACAACTGTCGTAGTGAAGAGGCTGAATCAAGTGACAGTTGGAAAACGAGAATTTGAACAGCAGATGCAGTTGATTGGAAATATTAAGCACGAGAATGTCGTTTCCTTAAGAGCATACTATTATTCAAAGGATGAGAAACTCATGGTCTATGACTACTATGGACAAGGGAGCGTGTCTGCAATGTTACATGGCAAGGAAGGGGATGGTTTACGTGTGTTAGATTGGGATACTCGGATGAAAATTGCCATTGGAGCGGCTCGAGGTCTTGCTCATATCCATACAGAAAATGGTGGAAAATGTACCCATGGAAATGTCAGAGCCTCAAACATCTTCCTCAACTCTAAAGGATACGGCTGTGTATCCGACGTTGGCTTGGCTGGGTTAATGAATTCAATTCCACTACCAGCCACAAGAACCCCTGGTTACCGAGCGCCTGAATTGACCGACACTCGGAGAGTATCAGAAGCAGCTGATGTCTACAGTTTCGGGGTGGTGCTACTGGAACTTCTGACTGGAAAATCTCCCATACACGTTGAAGGCTGTAATGAAGTTGTTAATTTAGTGAGGTGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTTGATGTTGAGCTTCTCAGGTATCCAAACATAGAAGAAGAAATGGTGGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCCGAACAGAGGCCAAAAATGATTGATTTAACGTCGAGAATCGAGCAAGTTCGGCAACACAGTACAGGAACGCAGCCGTCATCAGGGTCAAAATCAGCGTATTCGACTCCTGTTCATGTAATGGAAATCGGTTCTTCCTCACATCTACCTTGA 1896 43.51 MMKNSFMFLEILLFLAFICPRVLTEPVEDKQALLDFFHNIPHSPSLNWNESSSVCKAWTGVFCNSDESRVVALRLPGTGLRGPIPVNTLSRLSALEILSLRLNRLSGPFPFDFSKLGNLSSLYLQYNKFSGPLPSDFSVWNNLSVIDLSNNLFNGSIPSSISKLSHLTVLNLANNSFSGEIPNLDIPSLQRLDLSNNNLTGNVPHSLQRFPSWVFSGNNVTEEHSAIPPSFPLQPPTAQPTRKGKGLSESAILGIAIGGSVIGFILLAVLLTVWWLKKGKGNTSPSMDPKKKEASVKKRGFESQEQKNNLNFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSTTVVVKRLNQVTVGKREFEQQMQLIGNIKHENVVSLRAYYYSKDEKLMVYDYYGQGSVSAMLHGKEGDGLRVLDWDTRMKIAIGAARGLAHIHTENGGKCTHGNVRASNIFLNSKGYGCVSDVGLAGLMNSIPLPATRTPGYRAPELTDTRRVSEAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGLSCVAKMPEQRPKMIDLTSRIEQVRQHSTGTQPSSGSKSAYSTPVHVMEIGSSSHLP 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7781833 7785195 + MELO3C006971.2.1 Cme06g01065 330214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01065 631 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Cme06g01065 631 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515
Cme06g01065 631 Gene3D Ribonuclease Inhibitor 137 233 IPR032675 -
Cme06g01065 631 Gene3D Transferase(Phosphotransferase) domain 1 403 616 - -
Cme06g01065 631 SUPERFAMILY Protein kinase-like (PK-like) 331 595 IPR011009 -
Cme06g01065 631 Gene3D Phosphorylase Kinase; domain 1 292 401 - -
Cme06g01065 631 SUPERFAMILY L domain-like 38 213 - -
Cme06g01065 631 Pfam Protein tyrosine and serine/threonine kinase 331 594 IPR001245 GO:0004672|GO:0006468
Cme06g01065 631 PANTHER OS05G0588300 PROTEIN 21 622 - -
Cme06g01065 631 PANTHER LRR RECEPTOR-LIKE KINASE 21 622 - -
Cme06g01065 631 Gene3D Ribonuclease Inhibitor 28 136 IPR032675 -
Cme06g01065 631 MobiDBLite consensus disorder prediction 599 618 - -
Cme06g01065 631 ProSiteProfiles Protein kinase domain profile. 327 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g01065 Cme09g01959 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01065 Cme-Chr6:7781833 Cme08g02089 Cme-Chr8:26503489 0 dispersed
Cme01g00941 Cme-Chr1:10904398 Cme06g01065 Cme-Chr6:7781833 6.61E-73 transposed
Cme06g00266 Cme-Chr6:1620213 Cme06g01065 Cme-Chr6:7781833 2.63E-45 transposed
Cme06g01065 Cme-Chr6:7781833 Cme09g01959 Cme-Chr9:23541961 0 wgd
Cme06g01065 Cme-Chr6:7781833 Cme09g01821 Cme-Chr9:22530090 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64955 PF07714 PK_Tyr_Ser-Thr 8.20E-33 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01065 - - csv:101207123 1212.59