Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01078 ATGAATTCAGCTCTCCACAGAGGGTTGGCTTCTGGTTTTGATGGAATTAGAAACTTCTCTTCTAATAATCTCATGCCTGAAGGCTTTCCCTCAGAGAAGAAAATTCTCGATCCACAAGGGCCATTTCTTCAAAGTTGGAACAAGCTATTTGTGTTGTCTTGTGTGATTTCTGTTTCGTTGGATCCTTTGTTCTTTTATGTTCCTGTGATTGATATGAGAAAGATGTGCCTTAGATTAGATGGGAAAGTGGAGACTGTAGTCTGTATACTGCGGTTTTTTACAGATTTGTTCTATGTTGTGCATATTGTTTTTCAGTTTCGTACAGGATTTATTTCTCCCTCTTCACGAGTATTTGGAAGAGGTGTTTTAGAAGAAGATTCCTTGAGAATAGCAACGAGGTATCTGTCATCGTACTTTCTAATTGACATTTCTTCAGTCCTCCCACTTCCACAGGTGGCGATTCTGATAATGAGAGGTTCGAGATCAATGAATACGAAGGACTTGCTAAAATATGCTGTATTATTTCAATTTGTGCCAAGGTTTCTTCGAATCTATCCACTGTACAAAGAAGTTATGAGGACGTCGGGCATACTCATTGAAACAGCTTGGGCAGGAGTGGCATTTAATCTCTTTCTGTACATGCTGGCTGGCCACGTATTTGGGGCAATCTGGTACTTATGTTCCATACAGCGAGTAGGCCAGTGCTGGCAAGAAGCTTGTACCAAGCATCTTGGCTGTATCTTTACTTCATTATATTGTGATCATAATTACATTAATGAAGGGAATCAATTTCTCACTGAGATGTGCCCTGTCAAAAAGAAAAATATTGAACCTTTTAACTTTGGAATATTCATTCAAGCCCTTCAACCTGATATTGTAGAATCAGATTTTCCGAAGAAGTTCCTACACTGCTTCTGGTGGGGCTTGAGGAATATAAGCTCTTTGGGGCAAAATCTTACTACAAGTCCTTGCATATGGGAAAACTGCTTTGCCATTTTCGTTTGCATCTCTGGCTTAGTGTTGTTTGCATTTCTCCTAGGCAACATGCAGATGTATTGGCGATCCTCAAATGCAAGAGAGGAGGAGATGAGAGTGAGAAGGAATGATGCTGAACAATGGATGTCACATCGTTTACTCCCTGAGAACCTGAGGAAGCGGGTTCGTAGATATGAACATTACACTTGGCAAGAAACCAGAGGTGTTGATGAACATAGTCTGCTGCGTAATCTGCCTAGAGACATCCAACGATATTATAAACGTCATCTTTGCTTGGCTTTGCTCATGCGAGTCCCGATGTTTGAAAAGATGGATGAACGATTGTTGGATGCAATGTGTGTCCATCTCAAGCCAGTGCTGTACACAGAAGAAAGTTGTATTGTTCGGGAAGGCGATCCAGTTGATGAAATGCTCTTCATCATGAGAGGCAAGCTCTTGACCATGACTACAAATGGTGGGAGAACTATATTCTTCAACTCCGATTTCCTCATGGCTGGTGATTTCTGTGGAGAAGAACTACTGACATGGGCTCTAGACCCTCATTCCTCAACCAATCTCCCTATTTCAACTCGAACTGTCCGATCTCTTACAGAAGTTGAAGCATTTTCTTTTGAATCCAACGACTTGAAATTTGTTGCATCTCAATACCGCAAACTTCACAGCAAGCAGCTACGCCAAGTTTTCAGATTTTACTCACAGCAGTGGAGAACCTGGGCAGCTTGTTTCATACAAGCAACGTGGCGGTGGCGACGCCATCAAAGAAAGAAGCTCAAAGAGTCTCTCAAGGAGGAAGAGAGTAGGTTGAAAAACGCATTAGCTTCCCTTGAGGGCCAGTCACTGAGTTTAGGCACCACCATCTACGCAGCCAGATTTGCTGCTAACATGCTTCGCACGGTGAGACGAAATAGTACTAGAAGAGCTACGATAGCCATATTGCTTCAGAAGCCAGCTGAGCCTGATTTTTTGACCTTGGAAGATAACAACACATAA 1986 42.2 MNSALHRGLASGFDGIRNFSSNNLMPEGFPSEKKILDPQGPFLQSWNKLFVLSCVISVSLDPLFFYVPVIDMRKMCLRLDGKVETVVCILRFFTDLFYVVHIVFQFRTGFISPSSRVFGRGVLEEDSLRIATRYLSSYFLIDISSVLPLPQVAILIMRGSRSMNTKDLLKYAVLFQFVPRFLRIYPLYKEVMRTSGILIETAWAGVAFNLFLYMLAGHVFGAIWYLCSIQRVGQCWQEACTKHLGCIFTSLYCDHNYINEGNQFLTEMCPVKKKNIEPFNFGIFIQALQPDIVESDFPKKFLHCFWWGLRNISSLGQNLTTSPCIWENCFAIFVCISGLVLFAFLLGNMQMYWRSSNAREEEMRVRRNDAEQWMSHRLLPENLRKRVRRYEHYTWQETRGVDEHSLLRNLPRDIQRYYKRHLCLALLMRVPMFEKMDERLLDAMCVHLKPVLYTEESCIVREGDPVDEMLFIMRGKLLTMTTNGGRTIFFNSDFLMAGDFCGEELLTWALDPHSSTNLPISTRTVRSLTEVEAFSFESNDLKFVASQYRKLHSKQLRQVFRFYSQQWRTWAACFIQATWRWRRHQRKKLKESLKEEESRLKNALASLEGQSLSLGTTIYAARFAANMLRTVRRNSTRRATIAILLQKPAEPDFLTLEDNNT 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7991880 7996547 - MELO3C006981.2.1 Cme06g01078 330227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01078 661 CDD CAP_ED 432 551 IPR000595 -
Cme06g01078 661 SUPERFAMILY cAMP-binding domain-like 358 557 IPR018490 -
Cme06g01078 661 Coils Coil 586 610 - -
Cme06g01078 661 Pfam Cyclic nucleotide-binding domain 453 547 IPR000595 -
Cme06g01078 661 Gene3D Helix hairpin bin 354 423 - -
Cme06g01078 661 Gene3D - 52 353 - -
Cme06g01078 661 Gene3D Jelly Rolls 430 550 IPR014710 -
Cme06g01078 661 ProSiteProfiles cAMP/cGMP binding motif profile. 432 516 IPR000595 -
Cme06g01078 661 Pfam Ion transport protein 44 359 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme06g01078 661 SMART cnmp_10 432 563 IPR000595 -
Cme06g01078 661 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 16 655 - -
Cme06g01078 661 SUPERFAMILY Voltage-gated potassium channels 37 354 - -
Cme06g01078 661 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 16 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01078 Cme-Chr6:7991880 Cme09g01973 Cme-Chr9:23623350 0 dispersed
Cme06g01075 Cme-Chr6:7946204 Cme06g01078 Cme-Chr6:7991880 5.38E-27 proximal
Cme06g01077 Cme-Chr6:7976384 Cme06g01078 Cme-Chr6:7991880 2.92E-148 tandem
Cme06g01249 Cme-Chr6:10104936 Cme06g01078 Cme-Chr6:7991880 6.10E-17 transposed
Cme06g00103 Cme-Chr6:646155 Cme06g01078 Cme-Chr6:7991880 6.84E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01078 K05391 - csv:101214911 1248.42