Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01082 ATGACACGTCAGAAAACAGTCCTCCCTGGAGTGACCACGTGGGACAGCGCTGGCCCTACCTTTTTAACTCCATTTTGTACGGTAGCAGTGTTCTTCAGATCGTTAATGGGACTGCCCACCCCACTTTCCGGTGACCGGAAGTCCGTACAAGTTGTTCCCAATATTGACAATTCTTCGGACGATGAAACCAATTACAATTCATGGCTGAAAAAACATCCTTGTGGGTTGGAATCATTTGAGGGGATAATGAAAGGGCTGAAACGGAAGAAAATTGTTGTGTTTTTGGATTATGATGGAACTCTTTCCCCCATTGTTGATGATCCTGATCGAGCTTTCATGTCTTCTGAGATGAGAGAGGCCGTAAGAGAAGTGGCAAAATGCTTTCCAACAGCAATAATAAGTGGAAGAAGCCGAGATAAAGTAAAAGAGTTCGTGAAATTAAGTAATGTTCATTATGCTGGGAGCCATGGAATGGACATTACTACGGCTCCAACTTCCGACAATGAGGTCGATGCGGTTTCTTTTCAACCTGCCAAGAAATTTCTACCAGTAATTCAACAAATTAGGGAAGTATTAGAGGAAGAAACTAGAAAAATCGAAGGTGCAATGGTGGAGGATAATAGATTTTGTGTTTCGGTGCACTTTCGACATGTTCATGAGAGGGATTTGGATAAATTGGAAAAAAAGGTAGAGACTGTTCTTGAAAGATATCCTGATTTTCATATAACTTCGGGCAAAAAGGTTATGGAGATAAGACCTACCATAAATTGGAACAAAGGGCATGCAATGGAATATTATCTGCACACTCTTGGACATACTAACGAAGACGATGTTGTTCCTCTTTACATCGGAGATGATCGAACTGACGAAGATGCTTTTAAGGTAATACAAATGAGAGGGCAAGGGATTGCAATACTTGTATCATCAATACCAAAGAACACAAGGGCATCATACTCTTTGAAGGATCCATCGCAAGTTCTGGCTTTTCTGTTAAGGCTAGTAAGATGGAGGAAGCTCTCATCTTCTTCAATTACAAACCCACTTCCTTAG 1050 41.24 MTRQKTVLPGVTTWDSAGPTFLTPFCTVAVFFRSLMGLPTPLSGDRKSVQVVPNIDNSSDDETNYNSWLKKHPCGLESFEGIMKGLKRKKIVVFLDYDGTLSPIVDDPDRAFMSSEMREAVREVAKCFPTAIISGRSRDKVKEFVKLSNVHYAGSHGMDITTAPTSDNEVDAVSFQPAKKFLPVIQQIREVLEEETRKIEGAMVEDNRFCVSVHFRHVHERDLDKLEKKVETVLERYPDFHITSGKKVMEIRPTINWNKGHAMEYYLHTLGHTNEDDVVPLYIGDDRTDEDAFKVIQMRGQGIAILVSSIPKNTRASYSLKDPSQVLAFLLRLVRWRKLSSSSITNPLP 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8016445 8022812 + MELO3C006984.2.1 Cme06g01082 330231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01082 349 Gene3D - 93 320 IPR023214 -
Cme06g01082 349 Coils Coil 216 236 - -
Cme06g01082 349 SUPERFAMILY HAD-like 92 336 IPR036412 -
Cme06g01082 349 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 54 344 - -
Cme06g01082 349 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 93 299 IPR006379 -
Cme06g01082 349 Pfam Trehalose-phosphatase 94 324 IPR003337 GO:0003824|GO:0005992
Cme06g01082 349 Gene3D - 178 254 - -
Cme06g01082 349 Coils Coil 185 205 - -
Cme06g01082 349 TIGRFAM T6PP: trehalose-phosphatase 89 335 IPR003337 GO:0003824|GO:0005992
Cme06g01082 349 CDD HAD_TPP 92 328 - -
Cme06g01082 349 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 54 344 IPR044651 GO:0004805|GO:0005992
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01082 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - csv:101204169 487.263
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01082 Cme-Chr6:8016445 Cme06g02612 Cme-Chr6:33362898 6.34E-101 dispersed
Cme06g01082 Cme-Chr6:8016445 Cme07g01751 Cme-Chr7:23007277 1.37E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g876 . . . . Bpe03g00178 . . . Cmo16g00071 . . . . . . . Cpe14g00053 Bhi01g01461 . . . . Mch10g0084 . . . . . . . . . . . . . . . Cme06g01082 . . . . . . . . . . . Cma16g00067 . Car16g00059 . . . . . . . . . . Cla05g00952 Cam05g1042 Cec05g1047 Cco05g1041 Clacu05g1033 Cmu05g0983 Cre05g1062 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010851 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01082 Cme_Chr06 FPKM 26.206129 27.338118 21.624069 24.013008 19.589911 19.749466 19.441158 22.929298 20.62067 21.325531