Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme06g01105 | CCCCTTTTCTTTGGTTTAAATACCACACGATTTTATTCCTCAAATTTCACAATTTACACATTCTCTTTTCCTTGGATATTCATATCACAGCCACTTTTAATAAGGAATATGGAGAATTTTGGGGAATGGGATCAAAACAAGCTCAAAAATGAGTTACTTAAAGGGATGGAATTAGCAAAGCAACTCCAAATTCAACTCAATGTGAGATCAACACCATCATCATCCATGGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAATGATGGTTGTGAACTATTAGTTCAGAAGATTTTATGTTCATATGAAAAGGCACTGTCTTTGCTTAACTCATATGGAGCTCAAATAAATATATATGAATCTCCTTCCTCTTTCAATGGTGGAAGTCCAAGGAGTGAAGATTCGGACCGTGAATTTAAAGACCCATTTGATATAACCAATGCTAATTCTTTTCGCAAAAGGAACATTCTTCCAACATGGACACAGAAATTCCAAGTTAGTCCTGGGATGGCCATTGAAGGGTCTCTTGATGATGGATTTGCCTGGAGGAAATATGGTCAAAAAGGCATTCTTGGTGCCAAACATCCAAGAGGGTATTACAGATGCACACACAGGAACCTCCAAGGTTGTCAAGCAACCAAACAAGTTCAACGGTCGGACGACGACCCGACCATCTTCGAAATAACGTACAGAGGGAAGCATAGCTGCAGCCAAGTTTCAAACCTCAGTACTCCATGTACAACAACATCAGAGTTTCAACAACAAAATCAGGGTGTAGTAGTAGAATTACCCGACCAAAAAAAGGCCCAAAATCAACAAACATCACCTGATGCTCTCTTGGACTCATGGTCATCCTTAAGAGTCATAACTCAAAACCTCGACACAACTCATGAACCAACATTACAATTCCATCCTTTATGCTACGACCGTGTCGAGTTTGCTTCAACGTCGACTGTGGACGTGAACTTCACCGAGTTTTCTTCATTTTTGTCCCCAACAACATCTGGTTCCGGGTTGAGCTATTTCTCTGCCTCATCAAGTGGGTTGAGTGAAGGGTTTGTTGTTGGGAATCAGAACTTGAATAATTTGCAGCCAAACAATTGTGAGATATTTTCCTCACCAACTTCAGCTTTAAACACTCAAACTACTACTGCCTTAGATTTCTCTTTTGGTGAACTTCAAATGGAGCCAACTTTCTCATTTGACAACACAGACTTCTTCTCCTAA | 1248 | 39.9 | PLFFGLNTTRFYSSNFTIYTFSFPWIFISQPLLIRNMENFGEWDQNKLKNELLKGMELAKQLQIQLNVRSTPSSSMAASSSSSSSSSSSSSSSSNDGCELLVQKILCSYEKALSLLNSYGAQINIYESPSSFNGGSPRSEDSDREFKDPFDITNANSFRKRNILPTWTQKFQVSPGMAIEGSLDDGFAWRKYGQKGILGAKHPRGYYRCTHRNLQGCQATKQVQRSDDDPTIFEITYRGKHSCSQVSNLSTPCTTTSEFQQQNQGVVVELPDQKKAQNQQTSPDALLDSWSSLRVITQNLDTTHEPTLQFHPLCYDRVEFASTSTVDVNFTEFSSFLSPTTSGSGLSYFSASSSGLSEGFVVGNQNLNNLQPNNCEIFSSPTSALNTQTTTALDFSFGELQMEPTFSFDNTDFFS | 415 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8334020 | 8335726 | + | MELO3C026932.2.1 | Cme06g01105 | 330254 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme06g01105 | 415 | Gene3D | WRKY domain | 169 | 238 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g01105 | 415 | SUPERFAMILY | WRKY DNA-binding domain | 182 | 245 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g01105 | 415 | Pfam | WRKY DNA -binding domain | 184 | 243 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g01105 | 415 | SMART | WRKY_cls | 183 | 245 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g01105 | 415 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED | 37 | 412 | - | - | |
Cme06g01105 | 415 | MobiDBLite | consensus disorder prediction | 73 | 94 | - | - | |
Cme06g01105 | 415 | MobiDBLite | consensus disorder prediction | 130 | 150 | - | - | |
Cme06g01105 | 415 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 37 | 412 | IPR044810 | GO:0003700 | |
Cme06g01105 | 415 | ProSiteProfiles | WRKY domain profile. | 178 | 242 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g02792 | Cme-Chr4:33005609 | Cme06g01105 | Cme-Chr6:8334020 | 2.41E-30 | dispersed | |
Cme06g01105 | Cme-Chr6:8334020 | Cme07g01545 | Cme-Chr7:21319173 | 4.32E-61 | dispersed | |
Cme06g01105 | Cme-Chr6:8334020 | Cme07g01613 | Cme-Chr7:21921994 | 5.69E-18 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41493 | PF03106 | WRKY | 1.20E-26 | CL0274 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme06g01105 | - | - | csv:101211855 | 628.246 |