Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01105 CCCCTTTTCTTTGGTTTAAATACCACACGATTTTATTCCTCAAATTTCACAATTTACACATTCTCTTTTCCTTGGATATTCATATCACAGCCACTTTTAATAAGGAATATGGAGAATTTTGGGGAATGGGATCAAAACAAGCTCAAAAATGAGTTACTTAAAGGGATGGAATTAGCAAAGCAACTCCAAATTCAACTCAATGTGAGATCAACACCATCATCATCCATGGCTGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAATGATGGTTGTGAACTATTAGTTCAGAAGATTTTATGTTCATATGAAAAGGCACTGTCTTTGCTTAACTCATATGGAGCTCAAATAAATATATATGAATCTCCTTCCTCTTTCAATGGTGGAAGTCCAAGGAGTGAAGATTCGGACCGTGAATTTAAAGACCCATTTGATATAACCAATGCTAATTCTTTTCGCAAAAGGAACATTCTTCCAACATGGACACAGAAATTCCAAGTTAGTCCTGGGATGGCCATTGAAGGGTCTCTTGATGATGGATTTGCCTGGAGGAAATATGGTCAAAAAGGCATTCTTGGTGCCAAACATCCAAGAGGGTATTACAGATGCACACACAGGAACCTCCAAGGTTGTCAAGCAACCAAACAAGTTCAACGGTCGGACGACGACCCGACCATCTTCGAAATAACGTACAGAGGGAAGCATAGCTGCAGCCAAGTTTCAAACCTCAGTACTCCATGTACAACAACATCAGAGTTTCAACAACAAAATCAGGGTGTAGTAGTAGAATTACCCGACCAAAAAAAGGCCCAAAATCAACAAACATCACCTGATGCTCTCTTGGACTCATGGTCATCCTTAAGAGTCATAACTCAAAACCTCGACACAACTCATGAACCAACATTACAATTCCATCCTTTATGCTACGACCGTGTCGAGTTTGCTTCAACGTCGACTGTGGACGTGAACTTCACCGAGTTTTCTTCATTTTTGTCCCCAACAACATCTGGTTCCGGGTTGAGCTATTTCTCTGCCTCATCAAGTGGGTTGAGTGAAGGGTTTGTTGTTGGGAATCAGAACTTGAATAATTTGCAGCCAAACAATTGTGAGATATTTTCCTCACCAACTTCAGCTTTAAACACTCAAACTACTACTGCCTTAGATTTCTCTTTTGGTGAACTTCAAATGGAGCCAACTTTCTCATTTGACAACACAGACTTCTTCTCCTAA 1248 39.9 PLFFGLNTTRFYSSNFTIYTFSFPWIFISQPLLIRNMENFGEWDQNKLKNELLKGMELAKQLQIQLNVRSTPSSSMAASSSSSSSSSSSSSSSSNDGCELLVQKILCSYEKALSLLNSYGAQINIYESPSSFNGGSPRSEDSDREFKDPFDITNANSFRKRNILPTWTQKFQVSPGMAIEGSLDDGFAWRKYGQKGILGAKHPRGYYRCTHRNLQGCQATKQVQRSDDDPTIFEITYRGKHSCSQVSNLSTPCTTTSEFQQQNQGVVVELPDQKKAQNQQTSPDALLDSWSSLRVITQNLDTTHEPTLQFHPLCYDRVEFASTSTVDVNFTEFSSFLSPTTSGSGLSYFSASSSGLSEGFVVGNQNLNNLQPNNCEIFSSPTSALNTQTTTALDFSFGELQMEPTFSFDNTDFFS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8334020 8335726 + MELO3C026932.2.1 Cme06g01105 330254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01105 415 Gene3D WRKY domain 169 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g01105 415 SUPERFAMILY WRKY DNA-binding domain 182 245 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g01105 415 Pfam WRKY DNA -binding domain 184 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g01105 415 SMART WRKY_cls 183 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g01105 415 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 37 412 - -
Cme06g01105 415 MobiDBLite consensus disorder prediction 73 94 - -
Cme06g01105 415 MobiDBLite consensus disorder prediction 130 150 - -
Cme06g01105 415 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 37 412 IPR044810 GO:0003700
Cme06g01105 415 ProSiteProfiles WRKY domain profile. 178 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02792 Cme-Chr4:33005609 Cme06g01105 Cme-Chr6:8334020 2.41E-30 dispersed
Cme06g01105 Cme-Chr6:8334020 Cme07g01545 Cme-Chr7:21319173 4.32E-61 dispersed
Cme06g01105 Cme-Chr6:8334020 Cme07g01613 Cme-Chr7:21921994 5.69E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41493 PF03106 WRKY 1.20E-26 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01105 - - csv:101211855 628.246