Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01115 CATCATTCCTTTCTTTTCTCTCCCTCTCTCTCTCTCTCTCTCTTTTCATGCATTCACTTAACAAGCTGCATCTTACTAATACCATTTAGAAAGCTCCTCCGACAACTAGACGTCCGAATGTGCGATCCAACTACCATGATTAAAACCAAGAATACTCGCCGGAGACGGCGGCTGAGAGTTCGTAAACTGAGGTACAAATGGCAGAGGAATGTGCACGCGATAGAGGAAAGTGACAGCAACGAGTTAGGCCATAATGGACCTTCCGAATCCAATTCTGATCCACTGGTACTCTCCGAGAATGAATCGATTTCGGCCTTGGATTGTGGAGTGTACAGTGAGATGTCGATTATAGGGCGGAGAAAGGAGATGGAAGATGAAGTGAGAGTGGAATTGGGATTGACGGCGATTAATGATGAAAAGTACAATTTTTTTGCAGTGTATGACGGACACGGTGGCGCTCAGGTGGCGCAGGTGTGCCGTGAACGGTTGCACCAGATTGTGGCGGAGGAGATTGTGGGTTGGGGAGAGATGGATGAGGCGGAGTGGGGGAAGTTGATGGAGAAGTGCTTTGAGAGAATGGACGACGAAGTGAACAGAGGTGCTGCTGCGATGAAGACGGTCGGCTCGGCCGTGGTTGCGGCAGTGATTGGGAATGAGGAAGTGGTGGTGGCCAATTGCGGCGATTGTCGAGCCGTTTTAGGTAGGGATGGAATTGCGCTGCCCTTGTCTGACGATCATAAGCCTGGCAGAACTGATGAGTTGAAGAGAATTGAATCTGCCGGTGGAAGGGTCATAAACTGGAATGGCTACCGGGTGCTAGGAGTTCTTGCCACTTCAAGATCCATCGGTGATGAATATCTCAAACCATTTGTTATCTCAAAACCAGAAGTGACTGTGACCAAGAGAACCGACAACGATGAGTTTCTCATACTAGGAAGTGATGGTCTATGGGATGTTGTTTCGAATGAAATTGCCTGCAACATAGTGAGGAGATGTTTTGGAGGCAAATTGAAGAGGCTTTCGTTGAAAGTAGAGAATGACAGCCATGTTGCTGAAGCTGCAGCAGTGTTGGCAGAGCTCGCGGTGGCTCGTGGAAGCAAGGACAACATCAGTGTAATAGTAGTAGATTTGAGGAAACCAAAACGTTCCTCTCCATGA 1158 48.27 HHSFLFSPSLSLSLFSCIHLTSCILLIPFRKLLRQLDVRMCDPTTMIKTKNTRRRRRLRVRKLRYKWQRNVHAIEESDSNELGHNGPSESNSDPLVLSENESISALDCGVYSEMSIIGRRKEMEDEVRVELGLTAINDEKYNFFAVYDGHGGAQVAQVCRERLHQIVAEEIVGWGEMDEAEWGKLMEKCFERMDDEVNRGAAAMKTVGSAVVAAVIGNEEVVVANCGDCRAVLGRDGIALPLSDDHKPGRTDELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTDNDEFLILGSDGLWDVVSNEIACNIVRRCFGGKLKRLSLKVENDSHVAEAAAVLAELAVARGSKDNISVIVVDLRKPKRSSP 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8480427 8483004 - MELO3C008478.2.1 Cme06g01115 330264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01115 385 SMART PP2C_4 97 375 IPR001932 -
Cme06g01115 385 Pfam Protein phosphatase 2C 112 370 IPR001932 -
Cme06g01115 385 PANTHER ALPHABET, ISOFORM E-RELATED 69 379 - -
Cme06g01115 385 Gene3D - 106 384 IPR036457 -
Cme06g01115 385 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 69 379 - -
Cme06g01115 385 ProSitePatterns PPM-type phosphatase domain signature. 143 151 IPR000222 GO:0043169
Cme06g01115 385 CDD PP2Cc 110 377 IPR001932 -
Cme06g01115 385 ProSiteProfiles PPM-type phosphatase domain profile. 110 377 IPR001932 -
Cme06g01115 385 SUPERFAMILY PP2C-like 104 379 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01231 Cme-Chr4:17057698 Cme06g01115 Cme-Chr6:8480427 9.20E-68 dispersed
Cme05g00390 Cme-Chr5:3154244 Cme06g01115 Cme-Chr6:8480427 3.79E-132 dispersed
Cme06g00939 Cme-Chr6:6588261 Cme06g01115 Cme-Chr6:8480427 1.10E-55 dispersed
Cme06g01115 Cme-Chr6:8480427 Cme10g01458 Cme-Chr10:17809458 1.15E-48 dispersed
Cme06g01115 Cme-Chr6:8480427 Cme12g00139 Cme-Chr12:1356184 1.55E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01115 K14497 - csv:101214188 605.905