Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01132 ATGGGGCTGTATCATGGAATGGCTTCGAACTCAAGCTTTGAAAGGGGAATGGGTGTTTGTTTTAAGGATAATTTGTCGACTACACTGATTGGGCCTGTTCCAGTGCATTTTGTCAGGAGAATTCCCAGTTCACGATGTTTAAGACCACTCTGTTCTTCTGTGCGAAAAGATTTATCTGTGGCAGAATCGAAGCGTAATGATCAGGGGACTCTATCAGTTTCCATGGAGGAAGAATTGGACCATGTCATTAGATTCAAGATGTCTGATTTCAAGATTCTCGATTGTGTCAGCACTGGCCTTGGAGGTCGGGGGGATGAAATAGTTTTTGAAGCACTTGTCAATAATCGCCTTAGCCCTTTATACAACACAAAGGTCGTGCTTCGAAGGCTTAAGACTGCTCAGGCTCAGCGTAGAGGAAAACGAGCTATAGAAGTGTTAAAGAAACTTGCTCGTCGCAGACTGATGTATCATTCCTATTCGATGCAAGTTCATGGCTACATATCTTCACTTATGAGTAATGGCCACTCCTCGTTCACTCTGGTCCATGGGCATCACAGTAGTTTTTCTTTGAGGCATTGGCTGCAGCAATCAGACTGGCTTCCCACATTGGAAGCTACTCTTGCATTGGATGAAGAGTCTGTCAGAAAAGTTGGTGATACTACAACTGGAGGACCTGCAGTTTCACGCCACTCTCGACTCATTCGAGTATTGATGAGGGATCTCTTGATTGGAGTTAATTACTTGCATAGCCATGGGCTTGCACATACTGAGTTGAGGTTGGAAAATGTTCACATAAGCCCAGTTGATAGACATGTCAAAGTCGGAATTTTGGGAAATGCTGCTTACTTTCATGAAAATGCTGGAAGTGATAACGCTCCTGAAAATAACTTGGATCGGCGGCAGATGATGATTGCATTTGACATGAGATGTGTGGGGTTCATGATGGCAAAGATGGTTTTGCAGGAACTCATGGATCCATTGATATTCACGAAGTTTAAATCCTTCTTCACAAAGGGCCATGATCCTTCATGCTTGCGTGAATATTTATTGCGAGTCCTTGAACATAGACTATCATCTGGAAATGTTGGCTTACAAATACTTGACAGAAATTGGGGGGCAGGATGGAATCTTCTGTCCTTGTTACTTGCAAACAAGCCTTCTAAAAGAATAAGCTGTTTAGAGGCTCTCAGGCATCCATTCCTTTGTGGACCAAGATGGCGCGTAGCCCCATCAAAGGAAATTATTAGATGGGGTCTTGGTTCAACTGCAGTTCGAATTGCAGAGGAATATATTTACAGTCGTCCTCAGCGAAGAAAGCTTTCCCACTTCATTGAGTTGATGGAGATGTTGACTCCTCATTCAAAACCAAAGCATTGGCTGGAGGTAATTCCAGGAAAGTGGCGTTTCTTATACTCAACAGGGAGGCACATCGGGCTGACCCTTCGTCAACCTCCTGCTAGAGTTCTTATTGGAGACGTGTGCTTGACAGTTGCAAGAGACTCTAAATTAAACAATCGCCTCTCATTGACCTCAGACATCGAGTTCACAGTCATGAGAGGTCGTAACTGGCCCCATGATAAAATTGGTGTCAACGGTAAACTGGTAGGTTACTCTTCCTCCAGAATACAAGCTGGAAGAAGATTGTACCTGAAGGAAGAAAACACCACTTCTCAGCATGTTCTGGCTCAAAAGTTGTCTAGTCAGAAATGGAGGAAGGTGATTCCTTTTGATGAGCTTCCATCAAGCCTCCCAGCAGTAAAGCTCGTGCCAGCTGACATTGATTTGACAATGAAGCTCGATGATCCACTGAGCGAAGACGTAGACGCTGCAAGAAATGTAATTCAGGAAGTCCGGACACAAGTTCCACCAGAACTGTTTGATTTGTCAAAATTAATCTGTGGGACATATGTGGACTCCAGGCTTCTGATTCTTCGTTCAGTAGATGGATCTGCCCTCTTGTTTACCAGATCTTGTCTGGATGAAAACCATAGATGA 1995 43.91 MGLYHGMASNSSFERGMGVCFKDNLSTTLIGPVPVHFVRRIPSSRCLRPLCSSVRKDLSVAESKRNDQGTLSVSMEEELDHVIRFKMSDFKILDCVSTGLGGRGDEIVFEALVNNRLSPLYNTKVVLRRLKTAQAQRRGKRAIEVLKKLARRRLMYHSYSMQVHGYISSLMSNGHSSFTLVHGHHSSFSLRHWLQQSDWLPTLEATLALDEESVRKVGDTTTGGPAVSRHSRLIRVLMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHVKVGILGNAAYFHENAGSDNAPENNLDRRQMMIAFDMRCVGFMMAKMVLQELMDPLIFTKFKSFFTKGHDPSCLREYLLRVLEHRLSSGNVGLQILDRNWGAGWNLLSLLLANKPSKRISCLEALRHPFLCGPRWRVAPSKEIIRWGLGSTAVRIAEEYIYSRPQRRKLSHFIELMEMLTPHSKPKHWLEVIPGKWRFLYSTGRHIGLTLRQPPARVLIGDVCLTVARDSKLNNRLSLTSDIEFTVMRGRNWPHDKIGVNGKLVGYSSSRIQAGRRLYLKEENTTSQHVLAQKLSSQKWRKVIPFDELPSSLPAVKLVPADIDLTMKLDDPLSEDVDAARNVIQEVRTQVPPELFDLSKLICGTYVDSRLLILRSVDGSALLFTRSCLDENHR 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8672548 8677242 - MELO3C008489.2.1 Cme06g01132 330281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01132 664 Pfam Protein kinase domain 232 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01132 664 PANTHER CELL DIVISION PROTEIN KINASE 61 658 - -
Cme06g01132 664 Gene3D Transferase(Phosphotransferase) domain 1 226 403 - -
Cme06g01132 664 SMART serkin_6 90 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01132 664 SUPERFAMILY Protein kinase-like (PK-like) 83 411 IPR011009 -
Cme06g01132 664 ProSiteProfiles Protein kinase domain profile. 90 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01132 664 PANTHER PLASTID-LIPID-ASSOCIATED PROTEIN 14, CHLOROPLASTIC-RELATED 61 658 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01132 - - - csv:101205688 1308.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01132 Cme-Chr6:8672548 Cme09g00718 Cme-Chr9:8402832 1.34E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g910 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy06g01226 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010965 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 2 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64956 PF00069 Pkinase 1.50E-08 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01132 Cme_Chr06 FPKM 9.458014 9.269236 8.626989 8.207827 7.873598 8.51964 8.049987 7.980164 8.69223 7.892903