Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01133 ATGATAATCAAGCGCAATCTGAAAACCCAAATGCCGAATCTGAAACGGTGTAAACACGGCGACTCGGTTGGTGAAGACGATGAAACCTCGGCGGCGAGGAAGAAGAGAAAGCTAAACAGTTATTACCCACTTAATCTTCTTGGCGAGGTTGCGGCTGGAATCATCCCTTTGAAGCTTCACGACATTCTTGGCACCAACAACAAAGGGATTACAGCGTCGTGGTGTACACAGATTTCTTGTTCCGCCATGGAAATGGAGTCGAAGTCGAATAGCCGGGAATCATTAGCAAGAGAAGCTACGAAGAGACCGGCCGAGGTCCCACGACCGCCGCTTGTGAGGACTTCAAGAGGACGGGTTCAGGTACTTCCTTCTCGGTTTAACGATTCTGTTATTGAGAATTGGAGGAAAGACAGCAAGACTAGCTTGCGCGAGTACAATCTCGATGAGGAATTCAAATGTAAGAAGGAGAAATTCAGTTTCAAGACTCCTAGAATTTGTAATGGGACTACCAAGAAAGTACAAAACTGTGATAAATTGGGTTTCAAGTTTGTCAAGTGTCCGGCATTGTGTGAAGAGGAGGAAGATGAACCGGCGGGTATGGAGTTCAAGAATTTCGACTTCAGGAAATATTCGAGCTCCCGCAGTTCATTAACCTCCGTACACGAGACTGTTGTTGAAGATGAGAAGTTCCCAGTTCATGTAATTGGTGAAGATGGAAGCCCAAAAGAAACTAAACCAAAGGATGGTTTATATGGACCTGAAGACTTCTATTCAGGTGATATTGTATGGGCAAAGGCAGGGAGGAAGGAACCTTTTTGGCCTGCCATTGTCATTGATCCCATAACTCAAGCACCTGAATTAGTTTTGAGAGCTTGTGTTCCAGATGCAGCTTGCATTATGTTCTTTGGAGGGAACGAAAATCAAAGGGATTATGCATGGGTGAGGCGGGGGATGATCTTTCCATTTATGGATTTTGTAGACAGGTTCCAAGGACAGCCAGAATTGGATAGATGCAAATCCAACGAGTTCCAGATTGCAATAGAGGAAGCATTTTTGGCAGAACGTGGGTTCACAGAGAAATTGATTGCAGATATTAATATGGCAGCTGGAAATACGATTGCTGATGAATTTCTTTTCCGAGGAACTCAGGAAGCTACTGGTTCTAACCAGGATCCTGATTGTCATTCTCCTCCTAAGCGGACTAGTTGCATTATGGAAATGTATGCAAAGAAGAAAGATGGACGGCATTGTGAGGGATGTGGCCAAGCACTTCCTGTAAAATTGGTGAAGAAAATGAGGACTTCACCTCCTGGAACCCAGTTTTTATGTAAACCATGCACAAGGTTAACGAATTCAAAGCATTATTGTGGCATATGCAAAAAGATTTGGAATCATTCAGATAGTGGTAGTTGGGTTCGTTGTGATGGTTGTAAAGTATGGGTGCATGCAGAGTGTGACAAAATTTCAAGCAACCTGTTCAAGGATCTGGGAAGTACTGATTATTTCTGCCCTACGTGCAAAGCAAAATTTGATTTTGAACTATCAGACTCAGAAAAATGGCGACCCAAAATCAAAGGGAAGACAAGTAATGATGGAGTGGTTCGTGCTAACAAAGTTACTGTACTCTGCAATGGTGTGGAAGGCATTTATTTTCCAAGCCTTCACCTGGTTGTGTGCAAGTGTGGTTCTTGTGGTACAGAAAAACAAGCACTTAGTGAGTGGGAACGGCATACTGGATCTAAGTCAAGGAATTGGAAGACCAGTGTGAGGGTAAAAGGTTCCATGCTATCTCTAGAACAATGGATGCTCCAAGTAGCTGAGTATCATGCAAATGTTGTTTCTGTCAAGCACCCTAAACGGCCTTCCATGAAAGAACGGAGGCAAAAGTTGCTCGCTTTTCTGCAGGAGAAATATGAACCTGTTTATGCAAAGTGGACGACAGAGAGATGTGCTGTTTGTAGATGGGTTGAAGATTGGGACTACAATAAGATTATTATCTGCAACAGATGTCAGATAGCAGTTCATCAAGAATGCTACGGAGCTAGAAATGTTCGGGATATAACAACTTGGGTCTGTAAAGTTTGTGAAACTCCTGATGTTAAGCGGGAATGTTGCCTCTGTCCAGTAAAAGGTGGTGCCTTGAAGCCCACTGATGTCGACACACTATGGGTTCATGTTACCTGTGCTTGGTTCAGACCCGAAGTCTCTTTCGCCAGTGATGAGAAAATGGAACCTGCTCTTGGTATCTTGAGCATTCCGTCCAATTCTTTTGTAAAGATTTGTGTTATCTGTAAGCAAATTCATGGTTCATGCATGCAATGCTGCAAGTGTTCTACTTACTATCATGCTATGTGTGCATCAAGAGCAGGCTATTGCATGGAGTTGCACTGCCTGGAGAAGAATGGTAGACAAATCACCAAAATGGTATCTTATTGTGCTTATCATAGGGCTCCCAATCCGGATACTGTTCTAATCATACAGACTCCACTTGGGGTATTTTCTACTAAAAGCCTTCTTCAAAATAAGAAGAGAGCTGGTTCAAGGTTAATTTCATCTAACAGAAAGGAAATAGAAGAAGTGTCCGAAGCTTCTGAACTTGAGCCATTTTCTGCTGCAAGGTGTCAGGTTTATAAAAGATCAACCAGTGTGAAGAAGAGGACGGTTGAGGGAGCAGTTATTCACAAAGTGATGGGGCCATGCCATCATCCTTTAAAAGAAATACGGAGTCTTAACACATTCAACTTACCAATGGTAGAGGAACCAAAGATCTTTTCCTCATTTCGGGATCGATTGTACCACTTACAGAGAACAGAGCACGATCGGGTGTGCTTTGGTAGATCTGGTATACATGGATGGGGGCTTTTTGCACGTAGAAACATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTCCGGCGTACTGTTGCTGATCTAAGGGAGGCGCAGTACAGATTGGCGGGCAAAGACTGCTATCTTTTTAAGATCAGTGAAGAAGTAGTTGTTGATGCCACCGACAAAGGAAATATTGCACGCTTGATCAACCATTCATGTATGCCAAACTGCTACGCAAGGATCATGAGTGTGGGCGACGACGAAAGTCGGATTGTACTTATTGCCAAGGCTAATGTGCCTGCTGGCGAAGAGCTAACGTACGATTATTTGTTCGATCCGGATGAACCTGATGAATTCAAAGTCCCGTGTTTATGTAAAGCGCCAAACTGTCGAAAGTTCATGAATTAG 3249 43.34 MIIKRNLKTQMPNLKRCKHGDSVGEDDETSAARKKRKLNSYYPLNLLGEVAAGIIPLKLHDILGTNNKGITASWCTQISCSAMEMESKSNSRESLAREATKRPAEVPRPPLVRTSRGRVQVLPSRFNDSVIENWRKDSKTSLREYNLDEEFKCKKEKFSFKTPRICNGTTKKVQNCDKLGFKFVKCPALCEEEEDEPAGMEFKNFDFRKYSSSRSSLTSVHETVVEDEKFPVHVIGEDGSPKETKPKDGLYGPEDFYSGDIVWAKAGRKEPFWPAIVIDPITQAPELVLRACVPDAACIMFFGGNENQRDYAWVRRGMIFPFMDFVDRFQGQPELDRCKSNEFQIAIEEAFLAERGFTEKLIADINMAAGNTIADEFLFRGTQEATGSNQDPDCHSPPKRTSCIMEMYAKKKDGRHCEGCGQALPVKLVKKMRTSPPGTQFLCKPCTRLTNSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKDLGSTDYFCPTCKAKFDFELSDSEKWRPKIKGKTSNDGVVRANKVTVLCNGVEGIYFPSLHLVVCKCGSCGTEKQALSEWERHTGSKSRNWKTSVRVKGSMLSLEQWMLQVAEYHANVVSVKHPKRPSMKERRQKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDITTWVCKVCETPDVKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCMQCCKCSTYYHAMCASRAGYCMELHCLEKNGRQITKMVSYCAYHRAPNPDTVLIIQTPLGVFSTKSLLQNKKRAGSRLISSNRKEIEEVSEASELEPFSAARCQVYKRSTSVKKRTVEGAVIHKVMGPCHHPLKEIRSLNTFNLPMVEEPKIFSSFRDRLYHLQRTEHDRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRTVADLREAQYRLAGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKANVPAGEELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8683159 8691829 - MELO3C008490.2.1 Cme06g01133 330282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01133 1082 CDD PHD_ATX3_4_5_like 649 695 IPR042011 -
Cme06g01133 1082 ProSiteProfiles PWWP domain profile. 258 325 IPR000313 -
Cme06g01133 1082 Pfam PHD-zinc-finger like domain 703 815 - -
Cme06g01133 1082 ProSiteProfiles Extended PHD (ePHD) domain profile. 701 816 IPR034732 -
Cme06g01133 1082 ProSiteProfiles SET domain profile. 940 1057 IPR001214 GO:0005515
Cme06g01133 1082 ProSiteProfiles Zinc finger PHD-type profile. 453 509 IPR019787 -
Cme06g01133 1082 SUPERFAMILY FYVE/PHD zinc finger 451 511 IPR011011 -
Cme06g01133 1082 Gene3D - 253 357 - -
Cme06g01133 1082 SMART set_7 940 1063 IPR001214 GO:0005515
Cme06g01133 1082 Pfam SET domain 951 1056 IPR001214 GO:0005515
Cme06g01133 1082 Pfam PHD-finger 662 696 - -
Cme06g01133 1082 SUPERFAMILY FYVE/PHD zinc finger 648 712 IPR011011 -
Cme06g01133 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 700 818 IPR013083 -
Cme06g01133 1082 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1082 - -
Cme06g01133 1082 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1082 IPR025780 -
Cme06g01133 1082 MobiDBLite consensus disorder prediction 90 104 - -
Cme06g01133 1082 SMART PHD_3 649 696 IPR001965 -
Cme06g01133 1082 SMART PHD_3 760 816 IPR001965 -
Cme06g01133 1082 SMART PHD_3 455 507 IPR001965 -
Cme06g01133 1082 SUPERFAMILY SET domain 933 1079 IPR046341 -
Cme06g01133 1082 MobiDBLite consensus disorder prediction 89 110 - -
Cme06g01133 1082 Pfam PWWP domain 259 351 IPR000313 -
Cme06g01133 1082 ProSiteProfiles Zinc finger PHD-type profile. 647 698 IPR019787 -
Cme06g01133 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 641 699 IPR013083 -
Cme06g01133 1082 SUPERFAMILY Tudor/PWWP/MBT 251 355 - -
Cme06g01133 1082 Gene3D - 532 611 IPR010919 -
Cme06g01133 1082 ProSiteProfiles Post-SET domain profile. 1066 1082 IPR003616 -
Cme06g01133 1082 SMART PostSET_3 1066 1082 IPR003616 -
Cme06g01133 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 510 IPR013083 -
Cme06g01133 1082 PANTHER PHD FINGER PROTEINS 1 1082 - -
Cme06g01133 1082 CDD ePHD_ATX3_4_5_like 704 815 IPR041955 -
Cme06g01133 1082 CDD SET_SETD1-like 927 1078 - -
Cme06g01133 1082 ProSitePatterns Zinc finger PHD-type signature. 650 695 IPR019786 -
Cme06g01133 1082 Gene3D SET domain 923 1082 IPR046341 -
Cme06g01133 1082 Pfam PHD-finger 455 508 IPR019787 -
Cme06g01133 1082 CDD PHD_TCF19_like 456 506 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01133 - - - csv:101222415 2184.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02459 Cme-Chr1:32787051 Cme06g01133 Cme-Chr6:8683159 9.95E-07 dispersed
Cme03g00855 Cme-Chr3:16112820 Cme06g01133 Cme-Chr6:8683159 1.13E-24 dispersed
Cme06g01133 Cme-Chr6:8683159 Cme11g02426 Cme-Chr11:31072742 0 dispersed
Cme06g01133 Cme-Chr6:8683159 Cme03g00297 Cme-Chr3:3804756 7.07E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g912 . . . . Bpe03g00237 . . . . . . . . . Sed08g1878 . . Bhi01g01481 Tan01g0112 Cmetu06g2373 . Hepe07g0068 Mch10g0067 . . . . . . . . . . . . . . . Cme06g01133 . . . . . . . . . . . . . . . Cpe09g00030 . Bhi12g00774 . . Lac11g0079 Hepe06g0728 . Lcy12g0061 . . . . . . . . . Chy06g01210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007355 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41495 PF13832 zf-HC5HC2H_2 8.00E-27 CL0390 Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01133 Cme_Chr06 FPKM 28.680246 32.786488 21.620857 22.117268 28.137142 26.313627 28.312813 21.462643 22.194313 22.291359