Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01136 ATGGGCTACGGCAGGCTCAACGAAACCGACCCCGGCGGCCCTTCCGACTCTTCCTCCGTCGCCTCTGCCTTCCAACTCTCCGCCCACCACCCCACTCCCAATCGGAGCACCACACGCCTTCTCCTTATTTCCTTCCTCTCTCTCCTTCTCATCGTCGCCGCCGCCGTCTCAGCTACCTTCCTCATCGGACTACGAACCGCCTCCCCTGCTCGATCCGACCCAAATCTCCCTCGTAAACCCACTCAGGCAATTTCCAAAGCTTGTAGCCGAACTCGCTTCCCCACTCTCTGTGTCAACTCGCTCCTCGATTTCCCTGGCTCTCTCAACGCCAACGAACAAGATCTCGTTCACATTTCCTTCAATATCACTCTCCAACATCTCAACAAAGCCCTCTATTCATCCTCTGAGATTTCCTCTCTTCAAATGGATCTCCGTGTTCGTTCCGCTTACGATGCTTGTCTCGAACTCCTCGACGACTCCATCGACGCTGTTTCTCGTTCCTTGCAATCCGTCGCACCGTCTTCCTCATCCTCCACTCCGCAGCGGCTCGGCTCATCTGAAGATATCATTACCTGGCTTAGCGCTGCCCTAACTAATCAAGACACATGTACGGATGGATTCTCTGAACTCTCCGGTACTGTGAAAAACCAAATGGCAGATAAACTTCACAATCTGTCTGAACTTGTTAGTAATTGCTTGGCGCTGTTTTCCGGAAGCGAAACGAGCGATTTCGCCGGAGTGCCGATTCAGAACAAACGACGGTTGATGAAGGAGGAAGGAGAGAATGAGGATAGTTCCGGTAACTTCCCGAGATGGATGAGGGGGAGAGAGAGGAGGTTACTGACGTTGCCGGTGGGAGTGTTACAAGCGGATATTGTGGTTTCTCAGAACGGTAACGGAACGGTGAAGACGATCGCGGAAGCGATAAAAAAGGCGCCGCAGTACAGTAATAGAAGGACGATCATTTACGTGATGGCAGGAAGGTACGAAGAGAAAAACTTGAAGGTTGGGAGGAAGAAAACTAACCTCATGTTTGTTGGAGATGGGAAGGGTAAAACTGTCATTTCGGGTTCTAAAAGTATCTTCGATAATGTGACAACTTTTCACACCGCATCCTTTGGTAATTACCGAATAATTTAG 1140 50.61 MGYGRLNETDPGGPSDSSSVASAFQLSAHHPTPNRSTTRLLLISFLSLLLIVAAAVSATFLIGLRTASPARSDPNLPRKPTQAISKACSRTRFPTLCVNSLLDFPGSLNANEQDLVHISFNITLQHLNKALYSSSEISSLQMDLRVRSAYDACLELLDDSIDAVSRSLQSVAPSSSSSTPQRLGSSEDIITWLSAALTNQDTCTDGFSELSGTVKNQMADKLHNLSELVSNCLALFSGSETSDFAGVPIQNKRRLMKEEGENEDSSGNFPRWMRGRERRLLTLPVGVLQADIVVSQNGNGTVKTIAEAIKKAPQYSNRRTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGKTVISGSKSIFDNVTTFHTASFGNYRII 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8752862 8754487 + MELO3C027060.2.1 Cme06g01136 330285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01136 379 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 237 IPR035513 -
Cme06g01136 379 Gene3D - 286 377 IPR012334 -
Cme06g01136 379 PANTHER PECTINESTERASE 30 374 - -
Cme06g01136 379 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 236 IPR006501 GO:0004857
Cme06g01136 379 Gene3D Invertase/pectin methylesterase inhibitor family protein 81 238 IPR035513 -
Cme06g01136 379 PANTHER PECTINESTERASE 30 374 - -
Cme06g01136 379 MobiDBLite consensus disorder prediction 1 21 - -
Cme06g01136 379 CDD PMEI-like_3 87 237 - -
Cme06g01136 379 SMART PMEI_2 79 235 IPR006501 GO:0004857
Cme06g01136 379 Pfam Pectinesterase 291 374 IPR000070 GO:0030599|GO:0042545
Cme06g01136 379 Pfam Plant invertase/pectin methylesterase inhibitor 83 235 IPR006501 GO:0004857
Cme06g01136 379 SUPERFAMILY Pectin lyase-like 288 374 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01136 Cme-Chr6:8752862 Cme02g00062 Cme-Chr2:552855 4.46E-43 dispersed
Cme06g01136 Cme-Chr6:8752862 Cme09g01983 Cme-Chr9:23683621 3.46E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01136 - - cmo:103503123 685.256