Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme06g01137 | GGACCGGGACGGCATCAAGCAGTTGCGCTTCGAGTCGGCGCCGACCATGCAGTGGTCTACCGCTGCAACATAATCGGGTATCAAGACACTCTCTACGTCCATTCGAACCGTCAATTTTACAGAGAATGCGACATTTACGGGACAGTGGATTTCATCTTCGGCAACGCGGCAGTGGTGTTTCAGAACTGCAGCATTTACGCTCGCAAGGCAATGGCACTCCAAAAGAACACGATCACCGCCCAAAACCGGAAAGATCCGAATCAAAACACCGGAATTTCAATACACGCCTGCCGAATATTGGCGACCTCCGATCTACAATCGTCCAACACCTCTAACCCGACGTATCTGGGGCGTCCGTGGAAACTATACTCAAGAGTCGTGTTTATGTTATCGTACATAGGGGGACACGTGCACCCACGCGGTTGGTTGGAGTGGAACGCCACGTTTGCATTGGACACGCTGTATTACGGTGAGTATATGAATTATGGACCGGGGGGGGCGGTGGGACAGAGGGTGACGTGGCCGGGGTATCGAGTGATAACGTCGACGGTGGAAGCGAGTAAGTTCACGGTGGCTCAGTTTATTTACGGCTCCTCGTGGTTGCCGTCCACCGGAGTTGCATTTCTGGGAGGGCTAAACGTGTAA | 645 | 53.18 | GPGRHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSIYARKAMALQKNTITAQNRKDPNQNTGISIHACRILATSDLQSSNTSNPTYLGRPWKLYSRVVFMLSYIGGHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVAFLGGLNV | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 8755404 | 8756048 | + | MELO3C027375.2.1 | Cme06g01137 | 330286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme06g01137 | 214 | Pfam | Pectinesterase | 1 | 197 | IPR000070 | GO:0030599|GO:0042545 | |
| Cme06g01137 | 214 | Gene3D | - | 1 | 212 | IPR012334 | - | |
| Cme06g01137 | 214 | PANTHER | PECTINESTERASE | 1 | 212 | - | - | |
| Cme06g01137 | 214 | ProSitePatterns | Pectinesterase signature 2. | 45 | 54 | IPR033131 | - | |
| Cme06g01137 | 214 | PANTHER | PECTINESTERASE | 1 | 212 | - | - | |
| Cme06g01137 | 214 | SUPERFAMILY | Pectin lyase-like | 1 | 210 | IPR011050 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme06g01137 | Cme09g01983 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme06g01137 | Cme-Chr6:8755404 | Cme01g02238 | Cme-Chr1:31058209 | 1.01E-103 | dispersed | |
| Cme06g01137 | Cme-Chr6:8755404 | Cme09g01983 | Cme-Chr9:23683621 | 1.34E-133 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme06g01137 | - | - | cmo:103503264 | 449.129 |