Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01140 ATGGATTTGGATAGTATTGAGTGTGTATCGTCTTCTGATGGTCTCGATGAGGATGAGATTCATCTGCACCACACCCTTCATCCTTATTCCCAATCTCATCATCATCCCGAGTTGTCCGCATCTAAGCCTCGTTATGGAAACAATAATACCGCTGTGAACGGTGGTCCCACTGCAACTGCGCCGGCAACTAACGTTCATGAATTGCTGGAATGCCCTGTGTGTACTAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCCACATGTAAAACGAGAGTTCATAACCGGTGCCCAACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTGGCACTGGAGAAGGTGGCAGAGTCACTTGAATTGCCTTGCAAGTATTATTCATTGGGTTGCACTGAGATATTTCCATACTACAGTAAACTTAAGCATGAGGGTTTGTGCAACTACAGACCCTATAGTTGTCCATATGCTGGGTCAGAATGCTCTGCTATTGGGGACATTCCTTTGCTTGTTGCACATCTGAGGGACGATCATAAGGTGGACATGCACACTGGCTGCACATTTAACCATCGCTATGTTAAGTCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAGGCTTTTCAGCTTGGCATGGCTCCAGTGTACATGGCTTTCCTCCGTTTCATGGGCGATGAGAATGACGCCCGAACGTACAGCTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTGATATGGGAGGGTACACCACGAAGTATTAGAGATAGTCATCGAAAAGTTAGGGACAGCCATGACGGATTAATTATCCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGAAAGGAACTGAAGCTGAGGGTTACGGGAAGGATATGGAAGGAACAAAACCCGGAAGCTGGTGTTTGCATACCAAACCTTTGTAGCTAA 999 45.55 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSQSHHHPELSASKPRYGNNNTAVNGGPTATAPATNVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEGLCNYRPYSCPYAGSECSAIGDIPLLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENDARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPEAGVCIPNLCS 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8793153 8796700 - MELO3C008494.2.1 Cme06g01140 330289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01140 332 MobiDBLite consensus disorder prediction 32 58 - -
Cme06g01140 332 CDD Sina 185 313 - -
Cme06g01140 332 Pfam Seven in absentia protein family 113 312 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cme06g01140 332 SUPERFAMILY TRAF domain-like 124 316 - -
Cme06g01140 332 MobiDBLite consensus disorder prediction 27 58 - -
Cme06g01140 332 ProSiteProfiles Zinc finger RING-type profile. 71 107 IPR001841 -
Cme06g01140 332 CDD RING-HC_SIAHs 69 107 - -
Cme06g01140 332 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 324 - -
Cme06g01140 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 179 IPR013083 -
Cme06g01140 332 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 180 312 IPR008974 GO:0005515
Cme06g01140 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 123 IPR013083 -
Cme06g01140 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 324 - -
Cme06g01140 332 ProSiteProfiles Zinc finger SIAH-type profile. 124 184 IPR013010 GO:0008270
Cme06g01140 332 SUPERFAMILY RING/U-box 58 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01140 Cme-Chr6:8793153 Cme11g02420 Cme-Chr11:31019888 8.69E-179 dispersed
Cme06g01140 Cme-Chr6:8793153 Cme06g01141 Cme-Chr6:8798247 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01140 K04506 - csv:105434867 713.761