Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme06g01141 | ATGGATTTGGATAGTATTGAGTGTGTTTCATCTTCAGATGGTCTTGATGAAGATGAGATCCATCTGCATCATACTCTTCATCCTTATTCTCTTTCTCACCATCATCCAGAGTTGTCAGCGACCAAGCCTCGTAATGGAAGCAATAATAGCGGTATAGCAGTCCCCACTGCGACTGCACCTGCTACTAGCGTTCATGAATTGCTTGAGTGCCCTGTTTGTACCAATTCTATGTACCCCCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCATTGGAGAAGGTGGCAGAATCACTTGAATTGCCTTGCAAGTATTATTCATTGGGGTGCACTGAGATATTCCCATACTACAGTAAGCTTAAGCATGAGGCATTGTGCAACTACAGACCCTATAGTTGCCCTTATGCTGGGTCGGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTCAGGGATGACCATAAGGTGGACATGCACACTGGCTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTGTTCCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCGGTGTATATGGCTTTCCTTCGTTTCATGGGCGATGAGAATGATGCACGGACATACAGTTACAGTCTTGAGGTCGGTGGATACGGGCGGAAACTAATATGGGAGGGCACCCCACGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGACTAATCATTCAACGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGGAAGGAATTGAAACTTAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGAGTATGCATACCAAACCTGTGTAGCTAA | 996 | 45.28 | MDLDSIECVSSSDGLDEDEIHLHHTLHPYSLSHHHPELSATKPRNGSNNSGIAVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEALCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENDARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8798247 | 8800791 | - | MELO3C031660.2.1 | Cme06g01141 | 330290 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme06g01141 | 331 | ProSiteProfiles | Zinc finger SIAH-type profile. | 123 | 183 | IPR013010 | GO:0008270 | |
Cme06g01141 | 331 | MobiDBLite | consensus disorder prediction | 41 | 55 | - | - | |
Cme06g01141 | 331 | CDD | RING-HC_SIAHs | 68 | 106 | - | - | |
Cme06g01141 | 331 | CDD | Sina | 184 | 312 | - | - | |
Cme06g01141 | 331 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 176 | IPR013083 | - | |
Cme06g01141 | 331 | ProSiteProfiles | Zinc finger RING-type profile. | 70 | 106 | IPR001841 | - | |
Cme06g01141 | 331 | Pfam | Seven in absentia protein family | 112 | 311 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Cme06g01141 | 331 | SUPERFAMILY | TRAF domain-like | 123 | 315 | - | - | |
Cme06g01141 | 331 | MobiDBLite | consensus disorder prediction | 31 | 55 | - | - | |
Cme06g01141 | 331 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 64 | 112 | IPR013083 | - | |
Cme06g01141 | 331 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE | 1 | 323 | - | - | |
Cme06g01141 | 331 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 1 | 323 | - | - | |
Cme06g01141 | 331 | SUPERFAMILY | RING/U-box | 57 | 109 | - | - | |
Cme06g01141 | 331 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 177 | 311 | IPR008974 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g01141 | Cme-Chr6:8798247 | Cme11g02420 | Cme-Chr11:31019888 | 1.34E-179 | dispersed | |
Cme06g01140 | Cme-Chr6:8793153 | Cme06g01141 | Cme-Chr6:8798247 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme06g01141 | K04506 | - | csv:101215696 | 705.286 |