Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01141 ATGGATTTGGATAGTATTGAGTGTGTTTCATCTTCAGATGGTCTTGATGAAGATGAGATCCATCTGCATCATACTCTTCATCCTTATTCTCTTTCTCACCATCATCCAGAGTTGTCAGCGACCAAGCCTCGTAATGGAAGCAATAATAGCGGTATAGCAGTCCCCACTGCGACTGCACCTGCTACTAGCGTTCATGAATTGCTTGAGTGCCCTGTTTGTACCAATTCTATGTACCCCCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCATTGGAGAAGGTGGCAGAATCACTTGAATTGCCTTGCAAGTATTATTCATTGGGGTGCACTGAGATATTCCCATACTACAGTAAGCTTAAGCATGAGGCATTGTGCAACTACAGACCCTATAGTTGCCCTTATGCTGGGTCGGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTCAGGGATGACCATAAGGTGGACATGCACACTGGCTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTGTTCCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCGGTGTATATGGCTTTCCTTCGTTTCATGGGCGATGAGAATGATGCACGGACATACAGTTACAGTCTTGAGGTCGGTGGATACGGGCGGAAACTAATATGGGAGGGCACCCCACGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGACTAATCATTCAACGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGGAAGGAATTGAAACTTAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGAGTATGCATACCAAACCTGTGTAGCTAA 996 45.28 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSLSHHHPELSATKPRNGSNNSGIAVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEALCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENDARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8798247 8800791 - MELO3C031660.2.1 Cme06g01141 330290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01141 331 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270
Cme06g01141 331 MobiDBLite consensus disorder prediction 41 55 - -
Cme06g01141 331 CDD RING-HC_SIAHs 68 106 - -
Cme06g01141 331 CDD Sina 184 312 - -
Cme06g01141 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 176 IPR013083 -
Cme06g01141 331 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Cme06g01141 331 Pfam Seven in absentia protein family 112 311 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cme06g01141 331 SUPERFAMILY TRAF domain-like 123 315 - -
Cme06g01141 331 MobiDBLite consensus disorder prediction 31 55 - -
Cme06g01141 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 112 IPR013083 -
Cme06g01141 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 323 - -
Cme06g01141 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 323 - -
Cme06g01141 331 SUPERFAMILY RING/U-box 57 109 - -
Cme06g01141 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 311 IPR008974 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01141 Cme-Chr6:8798247 Cme11g02420 Cme-Chr11:31019888 1.34E-179 dispersed
Cme06g01140 Cme-Chr6:8793153 Cme06g01141 Cme-Chr6:8798247 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01141 K04506 - csv:101215696 705.286