Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01149 ATGGACTCCAATCCTCAAACCCTTCACAACATTATTCCACAGTTCGACTTTGAATGGCTACACGAAGATCTTTTCCCACTCCACAATGAATTAGATGAGCTTCCACCTTTAGATAACGATGAGCTTTTGGATGTGAATTCACGTTCATTATTACCATTCCATTTGGACGATAATGATGTTTTGGAGTTTGACAGTGAATTTTTGTCGAGGGAGTTGGAGATGGTTGAAATCGAAAGAAATGGGTTTTCATCAACTTGGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGAAAAGAGGTTGAGATTAATGGGAAATAATAATGGGAATAAGAGGAGAAAAGGTAGTTTTGTGTTGGGATTGGAAGAGATTCGAAAGTACTTTCATATACCAATATCAAAAGCAGCAAAAGAGATGAATGTTGGGTTGACAGTGCTTAAAAGAAGATGTAGACAACTTAATATCATGAGATGGCCTCATAGAAAACATAAGAGCTTGAATTCTCTCATCCAAAATGTGAAGGAAATGGGGTTAACAAATGAGGTAAAAGGGTTAGAGGAGCACAAGAGGCTACTGGAGGAAATGCCAAATATGGACCTCACCCACACAGTCAAAAGGCTAAGGCAAGCTTGCTTCAAAGCCAATTACAAGAAAAACAGAAGACTTAGGTCCAATAATATTGCTTCTCTTCATCACTAA 702 37.89 MDSNPQTLHNIIPQFDFEWLHEDLFPLHNELDELPPLDNDELLDVNSRSLLPFHLDDNDVLEFDSEFLSRELEMVEIERNGFSSTWKEEEEEEEEEEGEKRLRLMGNNNGNKRRKGSFVLGLEEIRKYFHIPISKAAKEMNVGLTVLKRRCRQLNIMRWPHRKHKSLNSLIQNVKEMGLTNEVKGLEEHKRLLEEMPNMDLTHTVKRLRQACFKANYKKNRRLRSNNIASLHH 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8857091 8858201 - MELO3C008502.2.1 Cme06g01149 330298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01149 233 PANTHER PROTEIN RKD4 55 225 IPR044607 GO:0003700
Cme06g01149 233 Pfam RWP-RK domain 121 167 IPR003035 -
Cme06g01149 233 PANTHER PROTEIN RKD1-RELATED 55 225 - -
Cme06g01149 233 ProSiteProfiles RWP-RK domain profile. 107 189 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01149 - - - csv:116402687 350.132
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01884 Cme-Chr2:25372623 Cme06g01149 Cme-Chr6:8857091 3.19E-32 dispersed
Cme03g00636 Cme-Chr3:10626516 Cme06g01149 Cme-Chr6:8857091 2.28E-62 dispersed
Cme06g01149 Cme-Chr6:8857091 Cme06g02194 Cme-Chr6:28076888 2.93E-87 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1032 . . . . . . . . . . . . . . Sed05g1782 . . Bhi01g01498 Tan01g0086 Cmetu03g1368 . Hepe07g0054 Mch10g0052 . . . . . . . . . . Cone14ag0006 . . . . Cme06g01149 . . . . . Bpe12g00349 Bma08g00389 . . . . . . . Car18g01240 . . . . . . . . . Cla05g00975 Cam05g1067 Cec05g1073 Cco05g1065 Clacu05g1059 Cmu05g1010 Cre05g1087 . Csa03g01978 Chy06g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41497 PF02042 RWP-RK 4.20E-22 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01149 Cme_Chr06 FPKM 0.900505 1.467602 0.0 0.468082 2.783064 2.339224 3.190913 0.0 0.0 0.0
Cme06g01149 Cme_Chr00 FPKM 0.983652 1.577334 0.0 0.517322 2.94067 2.571589 3.515993 0.0 0.0 0.0