Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01152 ATGCCTATCTCACAAGAAACATCCAATTTTGATGAGATTTCTATGAAGCAGAGTTTGATTTTCTCTGATTGTCTCAAGGATTTAAAGAACCTGAGGGCGCAATTATACTCAGCAGCAGAGTATTTTGAACTCTCATACACAAATGATGACCAAAAACAGATAGTGGTAGAAACATTGAAAGATTATGCTGTTAAAGCTCTTGTGAATACTGTGGATCACTTAGGTTCTGTTACTTTTAAGGTTAATGATCTTTTGGATGAAAAGGTTGATGAAGTCTCTGGAACAGAGTTTAGGGTGTCATGCATTGAACAGAGGCTAAGAACGTGTCAAGAGTATATCGATCATGAAGGGCATTCCCAACAATCCTTGGTGATAAATACACCAAAGTATCACAAGCGCTACATATTACCAGTTGGGGAGACCATGAATGGGGGTACCCAAACTAAATCCAAGTACCAAGGGTGCAACCTAGATGATGAAGATGAGTGGCACCAATTTAGAAATGCCGTCCGAGCAACTATCAGAGAAACGCCACCATCCATTATAAGTAAAGAAAATTCTCCTGTGCCTTCTCAACGAGCATCCCCGTCCCCGCAACCTAGAACATTCTCATTCACATCTACCATGCCCAAGAAGGAATTAGATAAGCGATCAGTTTCACCACATCGGTTTCCACTTTTGCGTTCTGGTTCGCTCTCGAGTAGGCCAAAGACACAAGGCTCAAGTCGATCGACTACTCCCCACTCAAGTCGGCCAACCACTCCAAGTAATTCCAATGGCCAACGGCGGTATCCTTCAGAACCTCGGAAATCAGCATCGATGCGAATACCAGCAGAAAGAGAAAGGGAAAGGGAAAGGGAAAAGGACAACAGCAAGGATGTTGAACAATATCCCAGCAAAAGCAAGCGCCTCTTAAAGGCCCTGCTTAGCCGACGCAAGTCGAAGAAAGACGACATGTTGTACACTTATTTGGATGAATACTAG 984 43.19 MPISQETSNFDEISMKQSLIFSDCLKDLKNLRAQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTFKVNDLLDEKVDEVSGTEFRVSCIEQRLRTCQEYIDHEGHSQQSLVINTPKYHKRYILPVGETMNGGTQTKSKYQGCNLDDEDEWHQFRNAVRATIRETPPSIISKENSPVPSQRASPSPQPRTFSFTSTMPKKELDKRSVSPHRFPLLRSGSLSSRPKTQGSSRSTTPHSSRPTTPSNSNGQRRYPSEPRKSASMRIPAEREREREREKDNSKDVEQYPSKSKRLLKALLSRRKSKKDDMLYTYLDEY 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8882902 8886967 + MELO3C008503.2.1 Cme06g01152 330301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01152 327 MobiDBLite consensus disorder prediction 273 300 - -
Cme06g01152 327 MobiDBLite consensus disorder prediction 179 209 - -
Cme06g01152 327 MobiDBLite consensus disorder prediction 174 302 - -
Cme06g01152 327 PANTHER ABIL1-LIKE PROTEIN 3 327 - -
Cme06g01152 327 PANTHER ABL INTERACTOR FAMILY MEMBER 3 327 IPR028457 -
Cme06g01152 327 MobiDBLite consensus disorder prediction 231 266 - -
Cme06g01152 327 Gene3D - 10 113 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01152 - - - csv:101216900 583.948
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00141 Cme-Chr6:858403 Cme06g01152 Cme-Chr6:8882902 7.42E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1031 . . . Bda07g01938 Bpe03g00193 . . . Cmo16g00048 . . . . . . . Cpe14g00033 Bhi01g01500 . . . . . . . . . . . . . Cone1ag0991 Cone5ag0696 . . . . . Cme06g01152 . Blo09g00021 . . . . . . . . . Cma16g00040 . . Car18g01239 . . . . . . . . . Cla05g00976 Cam05g1069 Cec05g1075 Cco05g1067 Clacu05g1061 Cmu05g1012 Cre05g1088 . Csa03g01977 Chy06g01190 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004623 1 4 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01152 Cme_Chr06 FPKM 0.232432 0.241526 0.0 0.185886 0.862336 0.77717 0.763986 0.613096 0.721177 0.629574
Cme06g01152 Cme_Chr00 FPKM 0.231931 0.0 0.297795 0.279595 0.95836 0.897527 1.232983 0.688805 0.850185 0.696996