Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01153 ATGACTCCGACAGCTTCCGTCGCTTCTGATGGAGAGGCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAGTCTGAGAAGAAAGCTTCAATTGTCTATAACGCTTTAATCGTCGATAAAGAGTTACAGCCAGACAAGGTGAAAAGGGCGATGTCAATTTCTAATGGAAAACTTTCAATACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTTCGTTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACTCGAAGTGGAATTCTGA 300 42.0 MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKLSIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8888087 8889956 - MELO3C008504.2.1 Cme06g01153 330302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01153 99 Gene3D - 7 97 - -
Cme06g01153 99 PANTHER EKC/KEOPS COMPLEX SUBUNIT PCC1 FAMILY MEMBER 10 96 IPR015419 -
Cme06g01153 99 Pfam Transcription factor Pcc1 18 91 IPR015419 -
Cme06g01153 99 PANTHER GEO08993P1 10 96 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01153 K15902 LAGE3, PCC1; EKC/KEOPS complex subunit LAGE3/PCC1 - csv:101217139 176.022
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1030 . . . . Bpe03g00194 . . Bma14g02011 Cmo16g00047 . . . . . Sed13g0050 . Cpe14g00032 Bhi01g01503 Tan01g0083 Cmetu06g0196 . Hepe07g0052 Mch10g0050 . . . . . . . . . Cone5ag0697 . . . . . Cme06g01153 . . . . . . . . . . . . . Car16g00039 Car18g01238 . . . . . . . . . Cla05g00977 Cam05g1070 Cec05g1076 Cco05g1068 Clacu05g1062 Cmu05g1013 Cre05g1089 . Csa03g01976 Chy06g01189 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009672 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01153 Cme_Chr06 FPKM 6.144515 6.640727 10.540935 9.920707 10.030103 11.192292 9.486585 8.424175 8.494607 9.195302
Cme06g01153 Cme_Chr00 FPKM 7.987358 10.552498 14.442398 12.594423 13.326043 15.335807 12.735173 10.497781 10.565546 10.464482