Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01156 ATGGAGAAGTCTAGATCTAAGAGGAATTACTACTATGACCACCAAGACTTTGATTCCGAGTCGATGGGTAGAACCAGACCTCGTTACAACAACAATCACTACCCCAATAATAATTATCGTCATCGTGGAAATGCTGTTCGACCCTCTAAACCTCAAGACCAATCTCTTATGGTCACCACTACTTACAGGATACTTTGTCATGATGCTAAAGCTGGGGGAGTTATTGGCAAATCTGGTAGTATTATTAAGTCTATAAGGCAGCATACCGGCGCGTGGATCAACGTGCATGAGCTTGTTCCTGGTGATGAGGAGAGGATAATTGAGATTTCGGACACACGGCGGCGGGACCCAGAAGGTCGGATGCCGTCGTTCTCTCCGGCTCAAGAAGCGCTTTTCCTGATTCATGAAAGGATTCTTGAGAGTGAAATGAGTCCTGGGTTTAATGGAATGGGGTATGGTCCTGAGGATGAGGAGGATGATTATGGTGGTGTTAGAGGAGGAGGTGGGAGCGGTTGCGGTGGTCGTGTGGCGACGAGGCTTGTTGTATCTAGAATGCACGTTGGTTGTTTGCTTGGGAAGGGAGGGAAGATAATCGAGCAAATGAGGATGGAAACCAAGACCCAGATAAGGATTCTACCTAGAGATCACAATTTGCCTCGTTGCATTTCAATGTCGGAGGAGATTGTTCAGATTGTTGGAGATACAAATGCTGTTAAAAAAGCTATAGCTATTGTTTCATCACGCTTGAGAGAGAGTCAGCATCGTGATCGTAGTCATTTCCATGGGCGTCTACATTCACCAGAGCGCATTTTCCCTCCCGATGATGATTATGTTCCACATAACGCACGGCGATTACCAATGGATGGACGGCCATTTAGACCACGCATGTCTGCTTCTAATTCAAGAGGCAATGACTATTCCAACCGTCAGTCTAATTTTATGGTGGAGCCTGGGGCTGCTCCTGTAAACGACAATATGATGCCCTTTTATGGCGAGGACCTTGTATTTAGAATATTATGCCCAATTGAGAAGATAGATAGTGTTATTGGAGAGTCTAATGGAATCATTGAATTACTTCGTAACGATGTTGGTGTGGATATCAAGGTTTCTGATCCTGTGACTGGTTCGAATGAACAGATTCTTATCATTTCCTCGGATGAGGGTCCAGATGATGAGCTTTTTCCAGCACAGGAAGCTTTGTTACACATCCAAACTCGCATTGTTGATCTTGTTCCTGATAAGGAGAACATTGTAACTACTAGGTTACTTGTACCATCAAGTGATATTGGATGTTTGGAGGGAAGAGATGGATCATTGTTAGAGATGAAGAGATTAACCGGTGCGAATGTACATATTGTGCCAAGAGAAGATCTTCCCATGTTTGTATCAGGGGCGGATGAGCTTGTACAGTTACGGAGAATGATCATAGGGGACATAAAAGCAGCTCGAGATGCACTTGTCGAGTTAACATCAAGATTACGGAATTGCCTTTATAAGGAGCCGTTCCAAAAAGATGCAAGCCCTCAAGTATCAGTACAAAGCACCATGGTCAGTTTAGGACTTGAGGAATCATCTTCAAATAATAACGCTGCAGCTCGTGAAGTTCATAGTGGAAATGATTCTGCAAGCACAGCTTTTCAAAATGTGCAACCTTTTGGAACAGCACAGCTTTTAAAGGAAACTGGAGGATCGAGCAATGAAACTGGTACGCAGAATGAAAATGATCGACGTGAAGATTTGCCTAGTGGGTTAAATAGATCAATAACTGTTCATTCACCTCTTAGGATACCTGTGCCACTTGTCACCCGGAGTACGCTCGAAGTTGTGATACCAGAGCCTGCAGTCCCCAAGCTTATAACAAAATCAAAAAACAAGCTTGCTCAGATCAGCGAGTTATCCGGAGCCAATGTTATGTTGGTAGAAGATAGACCAGATGTAACCCAGAAAATAATTCAAATATCAGGCACACCGGAGCAAGCTGAGAGAGCCCAGAGCTTGTTGCAAGGCTTTATTTTGAGCTGTGCTATTCGTGAAAGATGGAAACTTTTGGAGAGCCATACAAGAAGACGGAGCAAGATTAACCATTGCCATTTTTTGCCGCTCAGGATTGAGGCGAATCCCAGAATTTCTCCTGCCTTGAACTTCCGTCCCCCGTTTCAGGTGGTCGCTAGAAAACAGAGAAATGGTGAAGTTAGTGGTCGGCGAGTGTGGCGACGAAGAAAATTGACAAAGAAGGATGACATGTCGATCTACAAAATGGATCGAATCCCATTCCTTGAAGAACAGGTAAGGAGGGTAAAGGAACAGGGAAAGCTCATCACAATGGACATTGAAAGACTATTATTATCAGAGGACAACCGCTTTGATTTTGTGAATGAGGTTGCAGCTGAGGCTAAGGAATATGTCGAGAGCAACCGCGATGAATATGGGGGTTCCAAGAAAGCCATTCTTCATGTTCTCAGCAACCGTGTGAACGATGCAGGGTTTTATAGGCCAGATGCTTATGCTGAAGATGACCCATTTAAACCGGGACCTCATTATCTGAAACAAGAATTTACTTGA 2562 44.11 MEKSRSKRNYYYDHQDFDSESMGRTRPRYNNNHYPNNNYRHRGNAVRPSKPQDQSLMVTTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHERILESEMSPGFNGMGYGPEDEEDDYGGVRGGGGSGCGGRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISMSEEIVQIVGDTNAVKKAIAIVSSRLRESQHRDRSHFHGRLHSPERIFPPDDDYVPHNARRLPMDGRPFRPRMSASNSRGNDYSNRQSNFMVEPGAAPVNDNMMPFYGEDLVFRILCPIEKIDSVIGESNGIIELLRNDVGVDIKVSDPVTGSNEQILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKENIVTTRLLVPSSDIGCLEGRDGSLLEMKRLTGANVHIVPREDLPMFVSGADELVQLRRMIIGDIKAARDALVELTSRLRNCLYKEPFQKDASPQVSVQSTMVSLGLEESSSNNNAAAREVHSGNDSASTAFQNVQPFGTAQLLKETGGSSNETGTQNENDRREDLPSGLNRSITVHSPLRIPVPLVTRSTLEVVIPEPAVPKLITKSKNKLAQISELSGANVMLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSCAIRERWKLLESHTRRRSKINHCHFLPLRIEANPRISPALNFRPPFQVVARKQRNGEVSGRRVWRRRKLTKKDDMSIYKMDRIPFLEEQVRRVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKQEFT 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8905560 8913902 + MELO3C019371.2.1 Cme06g01156 330305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01156 853 Gene3D K Homology domain, type 1 602 673 IPR036612 GO:0003723
Cme06g01156 853 Gene3D K Homology domain, type 1 58 141 IPR036612 GO:0003723
Cme06g01156 853 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 3 572 - -
Cme06g01156 853 Gene3D K Homology domain, type 1 172 254 IPR036612 GO:0003723
Cme06g01156 853 ProSiteProfiles Type-1 KH domain profile. 175 245 - -
Cme06g01156 853 CDD KH-I 605 668 - -
Cme06g01156 853 MobiDBLite consensus disorder prediction 252 308 - -
Cme06g01156 853 Pfam KH domain 178 245 IPR004088 GO:0003723
Cme06g01156 853 Pfam KH domain 605 668 IPR004088 GO:0003723
Cme06g01156 853 Pfam KH domain 61 110 IPR004088 GO:0003723
Cme06g01156 853 CDD PCBP_like_KH 61 135 - -
Cme06g01156 853 MobiDBLite consensus disorder prediction 24 51 - -
Cme06g01156 853 ProSiteProfiles Type-1 KH domain profile. 59 131 - -
Cme06g01156 853 CDD PCBP_like_KH 179 246 - -
Cme06g01156 853 MobiDBLite consensus disorder prediction 559 585 - -
Cme06g01156 853 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 52 112 IPR036612 GO:0003723
Cme06g01156 853 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 572 - -
Cme06g01156 853 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 410 500 IPR036612 GO:0003723
Cme06g01156 853 ProSiteProfiles Type-1 KH domain profile. 603 667 - -
Cme06g01156 853 Gene3D - 332 499 - -
Cme06g01156 853 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 177 256 IPR036612 GO:0003723
Cme06g01156 853 SMART kh_6 332 405 IPR004087 GO:0003676
Cme06g01156 853 SMART kh_6 58 139 IPR004087 GO:0003676
Cme06g01156 853 SMART kh_6 416 481 IPR004087 GO:0003676
Cme06g01156 853 SMART kh_6 602 672 IPR004087 GO:0003676
Cme06g01156 853 SMART kh_6 174 250 IPR004087 GO:0003676
Cme06g01156 853 ProSiteProfiles Type-1 KH domain profile. 333 400 - -
Cme06g01156 853 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 592 675 IPR036612 GO:0003723
Cme06g01156 853 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 332 437 IPR036612 GO:0003723
Cme06g01156 853 MobiDBLite consensus disorder prediction 16 51 - -
Cme06g01156 853 MobiDBLite consensus disorder prediction 252 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01156 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101217605 1221.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01156 Cme-Chr6:8905560 Cme09g00254 Cme-Chr9:1938704 1.55E-67 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01156 Cme_Chr06 FPKM 16.461924 17.009027 22.919485 23.721754 22.80007 24.332144 25.794418 23.188026 24.957798 26.933226