Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01157 ATGGCTTTGCTGAGTCCTCGATTGCATAGATTCCGGCTAACTAAGCTCCACCATGTCTCCGCCTCCAAACCCACCAAAACAACTAAGCTCACTCTCAGAAAAAAAGCCAGATGCTGCTCTGCCATAGCTATTGATGCTCCATCTTCTTTAACAGGTGCTGCGGGAATCAGATGGGGTTCCACTACTTTGCAAGGCTTGCGGGAAGAAATGGAAGACGATGCTGTTGTGTGGTCTGATGGTTTCAATGATTTCTTGTTTGCTGCAGTGTTCGATGGCCATGGTGGCTATTCCTCTGTCAAGTTCCTCAGGGAGGAGCTGTACAAAGACTGCGTGGCAGCCCTGCAGGGCGGTCTGCTATTGAATGGAGGGGATTTTGAAGTGATAAAAGCGGCTTTGGAGAAGGCTTTTGATGATACTGATAAGAGACTACTCCTATTGCTTGAGGCAGCTGGGGAGGAAGATGAATCTGGTGCCACAGCAACCGTTGCATTCATTCGAAATGATGTGCTGTTCATTTCACATCTCGATTCTTCGAAGGGAGAGGGAGTTCTTCCTACGGTGTTATCTCGTTCTGGCGGAGCACAGGTGTTGACTAGTTCTCATCGGCCTTATGGAAATAACAGCACATCACTACAAGAGATTAGAAGAATTAGAGAAGCAGGTGGATGGTTCAATGGAGATTTGGTTACTGCATCACCAGAAATTTTCCAAGTTACACTCGGATCTAATGCTGAGTTTGTTCTGATGGCATCGGATGGCCTATGGGATTACATGAATAGCTCTGATGCGGTTGGGTTTGTTCGAAATGAACTTAGACAGCATGGCGACGTTCAGCTAGCTTGTGAAGCCCTCGCCCAAGCAGCCTTGGACAAAGGTTCACAAGACAATATCAGCATTATCATGGCTGATTTAGGGCGGACAGATTGGCAAAATTTGCCCCTTCAGCAAGACAATGTCATATTTGAACTGGCTCAAGCTTTCGCTACAATCGGACTCGTTTCGTTAGGTATTTGGTGGGCATCCTCTAGTTTCTCTCTTTAA 1041 46.69 MALLSPRLHRFRLTKLHHVSASKPTKTTKLTLRKKARCCSAIAIDAPSSLTGAAGIRWGSTTLQGLREEMEDDAVVWSDGFNDFLFAAVFDGHGGYSSVKFLREELYKDCVAALQGGLLLNGGDFEVIKAALEKAFDDTDKRLLLLLEAAGEEDESGATATVAFIRNDVLFISHLDSSKGEGVLPTVLSRSGGAQVLTSSHRPYGNNSTSLQEIRRIREAGGWFNGDLVTASPEIFQVTLGSNAEFVLMASDGLWDYMNSSDAVGFVRNELRQHGDVQLACEALAQAALDKGSQDNISIIMADLGRTDWQNLPLQQDNVIFELAQAFATIGLVSLGIWWASSSFSL 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8916370 8920711 + MELO3C019373.2.1 Cme06g01157 330306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01157 346 SUPERFAMILY PP2C-like 52 305 IPR036457 -
Cme06g01157 346 Pfam Protein phosphatase 2C 59 225 IPR001932 -
Cme06g01157 346 Pfam Protein phosphatase 2C 228 297 IPR001932 -
Cme06g01157 346 ProSiteProfiles PPM-type phosphatase domain profile. 57 304 IPR001932 -
Cme06g01157 346 Gene3D - 56 310 IPR036457 -
Cme06g01157 346 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
Cme06g01157 346 PANTHER PROTEIN PHOSPHATASE 2C 6 223 IPR015655 GO:0004722|GO:0006470
Cme06g01157 346 SMART PP2C_4 47 302 IPR001932 -
Cme06g01157 346 PANTHER PROTEIN PHOSPHATASE 2C 57 224 341 - -
Cme06g01157 346 PANTHER PROTEIN PHOSPHATASE 2C 224 341 IPR015655 GO:0004722|GO:0006470
Cme06g01157 346 PANTHER PROTEIN PHOSPHATASE 2C 57 6 223 - -
Cme06g01157 346 CDD PP2Cc 56 304 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01157 Cme-Chr6:8916370 Cme05g01846 Cme-Chr5:27268241 7.20E-25 dispersed
Cme06g01157 Cme-Chr6:8916370 Cme01g02548 Cme-Chr1:33435260 3.01E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01157 K04457 - csv:101218076 575.089