Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01158 CCCTACCCTAACCTCCACCCATTTTCCCCTTCTGTTTTCTCAAATGTGGCCTTCTCTAGGTATCCGTTTTCCCCATCTAACCTTATCTCGATCCCTTCCGCCGCCGAAAAAATGGGGAAGGCGGTGGTATATGTTCTTACAGCCACCGCCTTCGCTGTCTTCTTCCTAATTTCTCCCTCCAATTTCCACAGTCGGAACTATCAACAACCAACTCGTCGTCTAGGATTCAAATTCCCAAACCCTACTTTCGATCCTCTTGTTACGGAAATGGAGAGATTAGAAGCAGAGGAACGTGGTGAAAATGCGATTGGAGTGGAAAATCAAAATCATAAGATTACTGATGCTTATAGAAATTACTACGATGACGGGAGATTGAACATTTCGTTGAGGTTACTTGTGTTGTTTCCTTTGCTGGATAATTCGCCTAAAGACGGGGTTATCAGTTACGAGGAGTTGAGTGATTGGATTAATGGACAAGCTATTGAAAGATTGAATTATAGAACGACGAAACAATTGGAGTTCTACGACAAGAATGGAGATAACGCCATTTCATTCCATGAATATCTGCCGCAGTTCACTAAGGAAGATATTGCAAGAAATGAAACGGGATATGGAGAAGCTGGATGGTGGATAAAGCAATTCACAAATGCAGATGTTGACCAGAATGGCTTACTACATTTTGATGAACTGAAAGATTTCCTCCACCCAGAAGATAGCAGCAATTACCGAATACAAAACTGGCTGTTGGCACAGAAAATGAAGCGCATGGACCATGACAGAGATGGAAAGCTCAATTTTGATGAATTCCTTCACCATACATACGATATATACAAGAACTATATCGAATTTGAAACTCAAGGCGACGACATACCGACCGCTGAAGAGAAGTTTGATGAGCTTGATCTTGACGAGGATGAAGTGCTGTCAGTGGAAGAAATAAGACCGTTGTTCCAGTATCTTCATCCTGGAGAAGTGTCTTATGCTCAACATTACACAAGTCATTTGATTAATGAGGCTGATGACAATAAAGATGGGTACTTAACAATTGATGAAATGCTTAATCATGAGTATGCTTTCTACAGCACAGTATATGAAAATCAGAATGGAGATTATGAAGATGATTATTACCATGATGAACTTTGA 1143 40.68 PYPNLHPFSPSVFSNVAFSRYPFSPSNLISIPSAAEKMGKAVVYVLTATAFAVFFLISPSNFHSRNYQQPTRRLGFKFPNPTFDPLVTEMERLEAEERGENAIGVENQNHKITDAYRNYYDDGRLNISLRLLVLFPLLDNSPKDGVISYEELSDWINGQAIERLNYRTTKQLEFYDKNGDNAISFHEYLPQFTKEDIARNETGYGEAGWWIKQFTNADVDQNGLLHFDELKDFLHPEDSSNYRIQNWLLAQKMKRMDHDRDGKLNFDEFLHHTYDIYKNYIEFETQGDDIPTAEEKFDELDLDEDEVLSVEEIRPLFQYLHPGEVSYAQHYTSHLINEADDNKDGYLTIDEMLNHEYAFYSTVYENQNGDYEDDYYHDEL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8922972 8926954 - MELO3C019374.2.1 Cme06g01158 330307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01158 380 ProSitePatterns EF-hand calcium-binding domain. 176 188 IPR018247 -
Cme06g01158 380 ProSiteProfiles EF-hand calcium-binding domain profile. 205 240 IPR002048 GO:0005509
Cme06g01158 380 Pfam EF hand 253 269 IPR002048 GO:0005509
Cme06g01158 380 Gene3D - 80 202 - -
Cme06g01158 380 Gene3D - 273 357 - -
Cme06g01158 380 ProSitePatterns EF-hand calcium-binding domain. 340 352 IPR018247 -
Cme06g01158 380 SUPERFAMILY EF-hand 208 371 IPR011992 -
Cme06g01158 380 Gene3D - 212 272 - -
Cme06g01158 380 PANTHER RETICULOCALBIN 38 380 - -
Cme06g01158 380 SMART efh_1 292 320 IPR002048 GO:0005509
Cme06g01158 380 SMART efh_1 167 195 IPR002048 GO:0005509
Cme06g01158 380 SMART efh_1 209 237 IPR002048 GO:0005509
Cme06g01158 380 SMART efh_1 248 276 IPR002048 GO:0005509
Cme06g01158 380 SMART efh_1 331 359 IPR002048 GO:0005509
Cme06g01158 380 ProSitePatterns EF-hand calcium-binding domain. 257 269 IPR018247 -
Cme06g01158 380 ProSiteProfiles EF-hand calcium-binding domain profile. 288 323 IPR002048 GO:0005509
Cme06g01158 380 SUPERFAMILY EF-hand 130 194 IPR011992 -
Cme06g01158 380 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 38 380 - -
Cme06g01158 380 ProSiteProfiles EF-hand calcium-binding domain profile. 249 279 IPR002048 GO:0005509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01158 K23901 CALU; calumenin - csv:101207354 644.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01158 Cme-Chr6:8922972 Cme09g01096 Cme-Chr9:15543940 2.99E-57 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1018 . Blo15g00083 . . . Bpe07g01020 . . . . . . . . Sed07g2373 . . Bhi01g01509 Tan01g0073 Cmetu06g2632 . Hepe07g0046 Mch10g0046 . . . . . . . . Cone1ag0997 . . . . . . Cme06g01158 . . . . . . . Bma12g01216 . . . . . . Car18g01232 . . . . . . . . . Cla05g00982 Cam05g1073 Cec05g1080 Cco05g1072 Clacu05g1067 Cmu05g1018 Cre05g1092 . Csa03g01971 Chy06g01184 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012485 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01158 Cme_Chr06 FPKM 3.356586 3.348735 4.52985 5.375196 3.265686 3.652399 4.508155 9.715852 9.362548 10.831248