Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01164 ATGGCCACTTTATCAATTCCCCCCTCTCAAAATGGTTTCTCTCGCAGCTTCTTCTCTACAAAACGCCCACAAATTGTATACCCTTTTCCCCATTCGCTCCCCCGTATCACCTGCTCTGCTACCAGGGATGGGGCAAAACCAAGAGAGAATTTGTCACCCTGCAAGCATATTAGTACCGTAGCTTGTGGACTTCTTGCTGTTTGGGCTTTGACAAATACCTCTCCTGTCATTGCAGCTAATCAGAGGCTGCCTCCACTGTCTACAGAACCCAACCGATGTGAGCGTGCTTTTGTTGGCAATACTATAGGTCAAGCAAATGGTGTCTATGATAAGCCAATTGATCTTCGTTTCTGTGACTACACAAATGAAAAAAACCAGTTAAAAGGGAAATCTCTTGCTGCTGCATTGATGTCAGATGCAAAGTTCGATGGTGCAGACCTCTCTGAAGTGGTAATGTCAAAAGCTTATGCTGTTGGAGCCAGCTTCAAGGGTGTTGATTTCTCAAATGCAGTTCTAGACAGGGTAAATTTTGGGAAAGCCAATCTCCAAGGAGCTTTGTTCAAGAACACTGTGCTTTCGGGGTCAACATTTGATGACGCTCAATTGCAAGATGCAGTTTTTGAGGACACAATCATAGGCTACATTGATCTTCAGAAACTTTGTGTAAATCCAACTATTAGTCCTGAAGGAAGAGCTGAATTGGGATGTCGATGA 714 43.98 MATLSIPPSQNGFSRSFFSTKRPQIVYPFPHSLPRITCSATRDGAKPRENLSPCKHISTVACGLLAVWALTNTSPVIAANQRLPPLSTEPNRCERAFVGNTIGQANGVYDKPIDLRFCDYTNEKNQLKGKSLAAALMSDAKFDGADLSEVVMSKAYAVGASFKGVDFSNAVLDRVNFGKANLQGALFKNTVLSGSTFDDAQLQDAVFEDTIIGYIDLQKLCVNPTISPEGRAELGCR 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9051857 9055640 - MELO3C019377.2.1 Cme06g01164 330313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01164 237 Pfam Pentapeptide repeats (9 copies) 160 219 IPR001646 -
Cme06g01164 237 PANTHER THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTIC 1 237 IPR044195 -
Cme06g01164 237 Gene3D - 113 237 - -
Cme06g01164 237 SUPERFAMILY Pentapeptide repeat-like 115 219 - -
Cme06g01164 237 PANTHER THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTIC 1 237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01164 - - - csv:101218556 458.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01164 Cme-Chr6:9051857 Cme09g01649 Cme-Chr9:21220559 9.84E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1013 . . . Bda07g01940 Bpe03g00195 . . Bma14g02013 Cmo16g00042 . . . . . Sed07g0872 . Cpe14g00029 Bhi01g01510 Tan01g0072 Cmetu06g0962 . Hepe07g0045 Mch10g0045 . . . . . . . . . Cone5ag0703 . . . . . Cme06g01164 . Blo09g00019 . . . . . . . . . Cma16g00036 . Car16g00036 Car18g01230 . . . . . . . . . Cla05g00983 Cam05g1074 Cec05g1081 Cco05g1074 Clacu05g1068 Cmu05g1019 Cre05g1093 . Csa03g01970 Chy06g01181 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008341 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01164 Cme_Chr06 FPKM 0.451049 0.347784 0.0 0.0 0.070504 0.060815 0.090662 0.0 0.0 0.0
Cme06g01164 Cme_Chr00 FPKM 0.559743 0.57339 0.0 0.0 0.101328 0.043701 0.065149 0.0 0.0 0.0