Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01172 ATGAGAGCTCTTAAACGGACTCCAACTTCCTCTTCTCCGGATCCCAATTCCAATTCTACTCCTCCTCCTTCATCTTCCACATCCTCATCTTCCACATCCTCATCCTCAGCCTCCTCCTCATGGGTTCATTTGCGTTCGGTTCTATTTGTTGTCACTTCCTCTTCACCGGCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCCTCTTCTGATCGGGGGCGTCTTAAATCACCTTGGTCACGCAAGAAAAGGAAGCACGCACTTTCACCCCAACAATGGAGGGGTTTGTTTACGCCAGATGGGAAACTTAGAGATGGTGGCATTAAGTTTTTGAAAAAAGTTCGCAGTGGAGGTGTAGATCCAAGTATTAGAGCTGAGGTCTGGCCATTCCTTCTTGGAGTCTATGACTTGAGCAGTACTCAAGAAGAAAGAGATGCTGTAAGAGTTCAGAAGAGGAAAGAATATGAAAAACTTCGCAAACAATGCCAATCTTTACTGAAGTTTGGGACTGAGAGTATAAAGTTAGATGATGATGAGATGAACTGCAACAAGGAGGGGGGCACTCAGCATGTTGCTCATGGAGATGACTCTCCTACTTTGGAAGATGTGGTTAGTGCCAGAGAATCTATTTCTTGTGACGAAAAGGGCTCAAACTTTAGATACTTGGATGGAACCTCAGGTGTTTTGTTGGAAGAGGATGACAGTTCTAGACAGATGGCTATTGCCGATGCTGATGCTTCTGCTCTAAATACCGAATCATCTGATTCAGATTCTTCTGAGGATCCTGAAGTTAGTCAAACATTTCCTTCCTCAGATGGTAGAGAAGATACTGATCCTGATTTCAATTCCAAGAATTCATCTCCCTTGGTAACAGAGGTGACATCCAAATTTCGCAATAATGAAGACTTTACAACATGGCAGCGGATCATTCGCCTTGATGCAGTACGTGCAAATGCAGAATGGATAGCCTACGCACCATCCCTAGCAGAAGTATCGGATGATAAGGCTAGACATTTTGCCGAGGTTGTTGGTTTGAAAGATTACGACCACCTAGAATCCTGTAGGATCTTTCATGCTGCTAGATTAGTGCCTATTCTTGAAGCATATGCTCTATATGATCCTGAAATTGGGTATTGCCAAGGAATGAGTGATCTGCTTTCTCCTATAATCACTGTGATAACTGAAGATCATGAGGCATTTTGGTGCTTTGTGGGCTTCATGCGGAAAGCTCGACATAACTTTAGGCTTGATGAGGTTGGGATTCGAAAGCAACTGAATATTGTATCTAGAATCATCAAATTCAAGGACTCTCACCTTTACAGACACCTACAAGACCTCGAAGCGGAGGACTGCTTTTTCGTTTATAGGATGGTTGTGGTACTGTTTAGAAGGGAATTAACATTTGAACAGACGTTGTGCCTTTGGGAGGTGATGTGGGCTGATCAGGCAGCTATTAGAGCTGGTGTAGGTAAATCAGCTTGGAGCAGAATTAGGCAACGAGCCCCACCCACGGAGGACTTGCTGCTATATGCAATTGCTGCCTCAGTTTTACAGAAGAGGAAATTGATCATAGAAAAATACAACAGCATGGACGAAATTATAAGGGAGTGCAACAGCATGGCCGGGCAACTTGATGTATGGAAATTGTTGGACGATGCTCACGATTTGGTGGTGACCCTCCATGAGAAGATTGAAACTTCGTTTAACGAGTAA 1710 43.98 MRALKRTPTSSSPDPNSNSTPPPSSSTSSSSTSSSSASSSWVHLRSVLFVVTSSSPASSSSSSSSSSSSDRGRLKSPWSRKKRKHALSPQQWRGLFTPDGKLRDGGIKFLKKVRSGGVDPSIRAEVWPFLLGVYDLSSTQEERDAVRVQKRKEYEKLRKQCQSLLKFGTESIKLDDDEMNCNKEGGTQHVAHGDDSPTLEDVVSARESISCDEKGSNFRYLDGTSGVLLEEDDSSRQMAIADADASALNTESSDSDSSEDPEVSQTFPSSDGREDTDPDFNSKNSSPLVTEVTSKFRNNEDFTTWQRIIRLDAVRANAEWIAYAPSLAEVSDDKARHFAEVVGLKDYDHLESCRIFHAARLVPILEAYALYDPEIGYCQGMSDLLSPIITVITEDHEAFWCFVGFMRKARHNFRLDEVGIRKQLNIVSRIIKFKDSHLYRHLQDLEAEDCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQAAIRAGVGKSAWSRIRQRAPPTEDLLLYAIAASVLQKRKLIIEKYNSMDEIIRECNSMAGQLDVWKLLDDAHDLVVTLHEKIETSFNE 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9121507 9126291 - MELO3C019385.2.1 Cme06g01172 330321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01172 569 MobiDBLite consensus disorder prediction 52 73 - -
Cme06g01172 569 MobiDBLite consensus disorder prediction 180 208 - -
Cme06g01172 569 MobiDBLite consensus disorder prediction 180 201 - -
Cme06g01172 569 Gene3D - 417 564 - -
Cme06g01172 569 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 8 563 - -
Cme06g01172 569 MobiDBLite consensus disorder prediction 1 37 - -
Cme06g01172 569 PANTHER SMALL G PROTEIN SIGNALING MODULATOR 2-LIKE 8 563 - -
Cme06g01172 569 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 106 441 IPR035969 -
Cme06g01172 569 ProSiteProfiles TBC/rab GAP domain profile. 117 481 IPR000195 -
Cme06g01172 569 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 283 413 - -
Cme06g01172 569 MobiDBLite consensus disorder prediction 52 99 - -
Cme06g01172 569 MobiDBLite consensus disorder prediction 245 287 - -
Cme06g01172 569 MobiDBLite consensus disorder prediction 246 271 - -
Cme06g01172 569 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 418 555 IPR035969 -
Cme06g01172 569 MobiDBLite consensus disorder prediction 21 37 - -
Cme06g01172 569 Pfam Rab-GTPase-TBC domain 361 480 IPR000195 -
Cme06g01172 569 SMART tbc_4 114 526 IPR000195 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01172 - - - csv:101220060 1006.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme06g01172 Cme09g02008 CCT
Cme06g01172 Cme09g02008 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01172 Cme-Chr6:9121507 Cme06g02277 Cme-Chr6:29965995 3.53E-14 dispersed
Cme01g01861 Cme-Chr1:26559449 Cme06g01172 Cme-Chr6:9121507 9.17E-14 transposed
Cme05g01873 Cme-Chr5:27489671 Cme06g01172 Cme-Chr6:9121507 1.75E-08 transposed
Cme07g01967 Cme-Chr7:24764788 Cme06g01172 Cme-Chr6:9121507 3.38E-14 transposed
Cme06g01172 Cme-Chr6:9121507 Cme09g02008 Cme-Chr9:23824839 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g990 . . Bda05g00136 Bda07g01953 . . Bma10g01314 Bma14g02024 Cmo16g00032 Cmo18g01368 Cma02g01140 Cma15g01009 Car02g00945 Car15g00941 . Cpe05g00583 Cpe14g00021 Bhi01g01525 . . . Hepe07g0036 Mch10g0034 . Cla01g00022 Cam01g0021 Cec01g0019 Cco01g0023 Clacu01g0022 Cmu01g0021 Cre09g2486 Cone1ag1009 Cone5ag0717 . . . Csa05g00024 Chy09g01459 Cme06g01172 Blo07g00321 Blo09g00006 . . . . . . . Cmo02g01172 Cmo15g01072 Cma16g00027 Cma18g01336 Car16g00024 Car18g01251 Cpe09g00012 Cpe13g00328 Bhi12g00683 . . . Hepe06g0818 . . Cla05g00990 Cam05g1081 Cec05g1089 Cco05g1083 Clacu05g1075 Cmu05g1025 Cre05g1099 Lsi09g00002 Csa03g01962 Chy06g01174 Cme09g02008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001494 2 4 2 1 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01172 Cme_Chr06 FPKM 11.810224 13.298052 7.997474 8.146302 16.609104 16.221661 17.42057 14.239959 13.680417 14.768564
Cme06g01172 Cme_Chr00 FPKM 3.169323 2.5341 0.0 0.0 0.0 0.676057 0.0 1.491944 2.944382 1.459136
Cme06g01172 Cme_Chr00 FPKM 17.275742 19.040102 17.722422 18.482111 38.75275 37.801182 40.146935 21.695601 18.955021 20.431351