Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01191 ATGAGATCTCTACTGGTCTCAGAGGTGATGGTGCTTAATCTTCTCAAACCATCTTTATCTTTCCTCGTATGGATATTATTGAGTTCTTTCCTTTCTTTCTCTCTGGGTTTGAAACAGTCTAATCAAATCTGTGATTCAAAAGATTTATTGGCATTGAGGGGCTTTGTGAATAGCCTTGCAAATAATTCTGTTCTCTCTGTTTGGTTAAATGAATCCAACTGCTGCAATTGGGACGGCGTGGATTGTGGATATGATGGCAACAGCTCGATTACTAACAGAGTTACCAAGTTGGAACTGCCTAATTTGAATCTGAAAGGCAAGGTTTCACAATCACTTGGTGGTTTAGATCAGTTAATTTGGCTGAATCTATCATACAATCAGCTTGAAGGTGTATTGCCAACAGAATTCTCAAGCTTGAAGCAACTCCAGGTTTTGGATTTGAGTTACAACAAACTGTCAGGACCAGTCACAAATGCAACTTCAGGATTGATATCTGTTCGTGTTCTGAATATTTCCAGCAATTTATTCATTGGGGACTTTCCTCAGCTTGTGGGATTTCAAAATCTTGTTGCCTTCAACATAAGTAACAATTCTTTCACAGGCCAGCTTTCATCACAGATTTGCAATTCCTCCAACACGATTCAGTTTGTTGATATTTCACTGAACCGAATATCCGGCAATCTTCGAGGTGTCGACAGTTGCAGCAAATCTCTCAAACATTTCCGTGCAGACAGTAATTTACTTACCGGCCATCTGCCAGGTTCGTTGTATTCATTATCATCCATGGAGTATTTTTCAATTCCTGGGAACAGCTTCTTTGGCCAGTTAAGCATGGAACTAAGTAAGCTTTCTAGGCTTAAATCCTTTATAGTATTTGGAAACAAGTTTTCTGGTGAACTTCCAAATGTATTTGGTAATTTTTCAGAATTAGAGGAGTTAGTTGCACACTCCAACATGTTCTCTGGATTATTGCCTTCATCTCTGTCATTGTGCTCAAAGCTTAGAGTGTTTGATCTTAGAAACAATTCTTTAACTGGTACTATAGATCTTAATTTTTCTACGCTACCAGATCTTCAAATGCTTGATCTAGCCTCAAATCACTTTTCCGGGCCTCTACCAAATTCTCTATCTGATTGCCATGAACTGAAAACTCTTAGCCTTGCCAGGAACAAATTAACTGGTCAAATTCCTCGAGATTATGCAAAGCTCTCCTCTCTGTCGTTTTTATCTTTGTCGAACAACAGTATCATCGATTTGGGTGGTGCACTATCTACTTTACAAAATTGCAAAAACCTGACTGTTCTCATTCTTACAAAGAACTTTCGTAATGAGGAAATCCCACAGAGTGAAACTGTTTTCAACAACTTGATGCTTTTGGCATTTGGTAACTGTGGTCTGAGAGGACCAATTCCAGGTTGGTTAGTAGGTTGCAAGAAACTAAGCATCCTCGACTTGTCTTGGAATCACTTAAATGGAAGTATCCCTGCTTGGATTGGTCAGCTGGAGAATTTGTTTTATTTGGACTTATCCAACAATTCTCTGACAGGAGAAATCCCAAAAAGCTTGACACAGATGAAAGCACTAATTTCCAAAAATGGCAGCTTGTCGGGTTCGACATCTTCTGCTGGAATCCCCCTTTTTGTCAAACGAAATCAAAGTGCCACTGGTCTGCAATACAACCAAGCATCAAGCTTTCCACCATCCATTTACTTGAGCTACAACAGAATAAATGGAACCATTTTTCCAGAAATTGGCAGATTAAAATGGCTGCACGTCTTGGATTTGAGTAGGAACAATATTACTGGCTCCATACCAGGCACCATATCAGAGATGGAGAACTTGGAAACACTAGATTTGTCAAATAATGACCTTTATGGGCAAATTCCACCATCACTCAACAAGCTCACATTCTTGTCAAAGTTTAGCGTGGCAAATAATCACTTGGTGGGACCAATTCCTAATGGAGGGCAATTCTTAAGCTTTCCCAGCTCCAGCTTTGATGGTAATATAGGACTTTGTGGGGAAATTGATAACCCTTGTCACTCTGGTGATGGGTTAGAAACAAAACCCGAAACCAACAAATTTTCAAAGAGAAGAGTTAATAGAAGTGTCATTCTTTGCCTTACAGTCGGTGCAGCTGCAGCAATCCTCCTGCTCCTTACAGTGGTTCTACTTAAAATTTCCAGAAAAGATGTTGGAGATCGACGAAATAATCGTTTTGATGAGGAATTTGACAGGGCTGACAGATTATCTGGAGCTCTTGGATCGTCAAAGTTGGTGCTCTTTCAGAATTCAGAATGCAAGGATCTTACAGTTGCTGAGTTGTTAAAAGCTACTTGCAATTTTAACCAAGCAAACATAATCGGCTGTGGTGGATTTGGCTTGGTTTACAAAGCCAGCCTTCCCAATGGTTCAAAAGCTGCAGTCAAGAGGCTTACAGGAGATTGTGGTCAAATGGAACGGGAATTCCAAGCTGAAGTAGAAGCTCTTTCTCGAGCGCAGCATAAGAACCTTGTTTCTCTTCAAGGTTACTGCAAACATGGAAATGACAGGCTATTAATTTACTCCTACATGGAAAATGGAAGTTTGGACTATTGGCTTCACGAGGTTGTTGATAATGATTCAATACTAAAATGGGAAACAAGGCTCAAAATTGCACAAGGTGCTGCTCACGGATTGGCTTACTTGCATAAGGAATGTCAGCCCAACATAATTCACCGAGATGTAAAATCCAGCAACATACTTCTAGATGACAGATTTGAGGCTCATTTAGCTGATTTTGGTCTTTCACGATTACTCCGTCCGTATGACACTCATGTTACCACGGACTTGGTTGGGACTTTGGGTTATATTCCTCCTGAATACAGCCAGACATTAACTGCAACTTGCAGGGGTGATGTTTACAGTTTTGGTGTTGTGCTCCTTGAGCTTCTTACCGGTCGTAGGCCCGTAGAGGTATGCAAAGGTAAAGCCTGCAGGGATTTGGTGTCTTGGGTGATTCAAAAGAAATCAGAAAAGAGAGAAGAGGAGATTATTGATCCTGCAATTTGGAATACAAATAGCAAAAAACAGATTTTAGAGGTTCTTGGTATTACTTGTAAATGCATAGAACAAGATCCAAGGAAGAGACCTTCGATTGAAGAAGTTTCTTCATGGCTAGATGGTGTAACGTTGTAG 3177 40.2 MRSLLVSEVMVLNLLKPSLSFLVWILLSSFLSFSLGLKQSNQICDSKDLLALRGFVNSLANNSVLSVWLNESNCCNWDGVDCGYDGNSSITNRVTKLELPNLNLKGKVSQSLGGLDQLIWLNLSYNQLEGVLPTEFSSLKQLQVLDLSYNKLSGPVTNATSGLISVRVLNISSNLFIGDFPQLVGFQNLVAFNISNNSFTGQLSSQICNSSNTIQFVDISLNRISGNLRGVDSCSKSLKHFRADSNLLTGHLPGSLYSLSSMEYFSIPGNSFFGQLSMELSKLSRLKSFIVFGNKFSGELPNVFGNFSELEELVAHSNMFSGLLPSSLSLCSKLRVFDLRNNSLTGTIDLNFSTLPDLQMLDLASNHFSGPLPNSLSDCHELKTLSLARNKLTGQIPRDYAKLSSLSFLSLSNNSIIDLGGALSTLQNCKNLTVLILTKNFRNEEIPQSETVFNNLMLLAFGNCGLRGPIPGWLVGCKKLSILDLSWNHLNGSIPAWIGQLENLFYLDLSNNSLTGEIPKSLTQMKALISKNGSLSGSTSSAGIPLFVKRNQSATGLQYNQASSFPPSIYLSYNRINGTIFPEIGRLKWLHVLDLSRNNITGSIPGTISEMENLETLDLSNNDLYGQIPPSLNKLTFLSKFSVANNHLVGPIPNGGQFLSFPSSSFDGNIGLCGEIDNPCHSGDGLETKPETNKFSKRRVNRSVILCLTVGAAAAILLLLTVVLLKISRKDVGDRRNNRFDEEFDRADRLSGALGSSKLVLFQNSECKDLTVAELLKATCNFNQANIIGCGGFGLVYKASLPNGSKAAVKRLTGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCKHGNDRLLIYSYMENGSLDYWLHEVVDNDSILKWETRLKIAQGAAHGLAYLHKECQPNIIHRDVKSSNILLDDRFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLTATCRGDVYSFGVVLLELLTGRRPVEVCKGKACRDLVSWVIQKKSEKREEEIIDPAIWNTNSKKQILEVLGITCKCIEQDPRKRPSIEEVSSWLDGVTL 1058
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9341956 9345132 - MELO3C019404.2.1 Cme06g01191 330340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01191 1058 PANTHER PHYTOSULFOKINE RECEPTOR 2 623 1055 - -
Cme06g01191 1058 PANTHER PHYTOSULFOKINE RECEPTOR 2 42 446 - -
Cme06g01191 1058 PANTHER PHYTOSULFOKINE RECEPTOR 2 447 530 - -
Cme06g01191 1058 PANTHER PHYTOSULFOKINE RECEPTOR 2 570 627 - -
Cme06g01191 1058 ProSiteProfiles Protein kinase domain profile. 782 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01191 1058 CDD STKc_IRAK 788 1049 - -
Cme06g01191 1058 Gene3D Ribonuclease Inhibitor 42 266 IPR032675 -
Cme06g01191 1058 Pfam Leucine Rich Repeat 503 522 IPR001611 GO:0005515
Cme06g01191 1058 Gene3D Ribonuclease Inhibitor 273 374 IPR032675 -
Cme06g01191 1058 Gene3D Phosphorylase Kinase; domain 1 748 857 - -
Cme06g01191 1058 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 447 530 - -
Cme06g01191 1058 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 623 1055 - -
Cme06g01191 1058 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 42 446 - -
Cme06g01191 1058 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 570 627 - -
Cme06g01191 1058 Gene3D Ribonuclease Inhibitor 375 685 IPR032675 -
Cme06g01191 1058 SUPERFAMILY Protein kinase-like (PK-like) 763 1053 IPR011009 -
Cme06g01191 1058 ProSiteProfiles Leucine-rich repeat profile. 613 636 IPR001611 GO:0005515
Cme06g01191 1058 Gene3D Transferase(Phosphotransferase) domain 1 858 1057 - -
Cme06g01191 1058 SUPERFAMILY L domain-like 44 325 - -
Cme06g01191 1058 SMART LRR_typ_2 355 379 IPR003591 -
Cme06g01191 1058 SMART LRR_typ_2 403 426 IPR003591 -
Cme06g01191 1058 SMART LRR_typ_2 115 138 IPR003591 -
Cme06g01191 1058 SMART LRR_typ_2 587 610 IPR003591 -
Cme06g01191 1058 SMART LRR_typ_2 501 525 IPR003591 -
Cme06g01191 1058 SMART LRR_typ_2 139 162 IPR003591 -
Cme06g01191 1058 SMART LRR_typ_2 611 635 IPR003591 -
Cme06g01191 1058 ProSiteProfiles Leucine-rich repeat profile. 405 427 IPR001611 GO:0005515
Cme06g01191 1058 Pfam Leucine rich repeat N-terminal domain 46 82 IPR013210 -
Cme06g01191 1058 ProSitePatterns Protein kinases ATP-binding region signature. 788 810 IPR017441 GO:0005524
Cme06g01191 1058 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Cme06g01191 1058 Pfam Leucine rich repeat 569 624 IPR001611 GO:0005515
Cme06g01191 1058 Pfam Leucine rich repeat 333 392 IPR001611 GO:0005515
Cme06g01191 1058 SMART serkin_6 782 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01191 1058 ProSitePatterns Serine/Threonine protein kinases active-site signature. 904 916 IPR008271 GO:0004672|GO:0006468
Cme06g01191 1058 SUPERFAMILY L domain-like 294 653 - -
Cme06g01191 1058 PRINTS Leucine-rich repeat signature 504 517 - -
Cme06g01191 1058 PRINTS Leucine-rich repeat signature 611 624 - -
Cme06g01191 1058 Pfam Protein kinase domain 783 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02528 Cme-Chr1:33253445 Cme06g01191 Cme-Chr6:9341956 0 dispersed
Cme03g00296 Cme-Chr3:3795027 Cme06g01191 Cme-Chr6:9341956 1.10E-74 dispersed
Cme06g01191 Cme-Chr6:9341956 Cme10g01369 Cme-Chr10:15897984 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64957 PF00069 Pkinase 3.00E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01191 - - cmo:103496072 2041.16