Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01197 ATGGGTTGCGTTTGCTGTAAGCCCTCTGCTATTGAAGATAGCAAGGAAAGTCCAAGGGATAGGGTGTCAAGTAAGACCTCTTCTGACCTGCGGGTTGCAAGACTGACTTCGTCATCGAGGGAAGAAGCTTATCGAGCTAAAGATCAGTATGATGGTAATGATGCGAGAGTGACATTGATTGAAAAGCAGGTGAATGGGTCTGGTCGACTGCCAGGGGAGAATTTTGAGAGGAAGAGGGAGAAGATGGAGCATATGACTGCTCAACATCCTTCAATGGGGAGAATTCCGAAGGCAGCAGAGGGAGACCACATTGCTGCAGGGTGGCCGCCATGGCTGGCTGCAGTTGCAGGAGAGGCAATCAGAGGATGGCTACCCCGACGAGCTGATTCTTTTGAGAAATTGGATAAAATTGGCCAAGGGACTTATAGTAATGTATATAGGGCTCGGGATCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTAAGGTTTGACAATCTGGAACCTGAGAGCGTTCGCTTTATGGCTAGGGAAATTCACATATTGCGTAGACTTGATCATCCAAATGTAATAAAGTTGGAGGGTCTAGTTACATCTCGGATGTCTTGCAGCCTCTATCTTGTTTTTGAGTACATGGAACATGACCTGGCAGGACTTGCATCACACCCTGGTGTGAAGTTTACAGAGGCGCAGGTTAAATGTTACATGCAGCAACTTTTATGTGGACTTGATCATTGTCACAGTCATGGAGTTCTACATCGTGATATAAAGGGTTCCAACCTTTTAATTGACAATCATGGTGTCTTGAAAATTGCAGACTTTGGTCTAGCAAGCTTTTTTGATATCCATCAAAATCAGCCTCTGACTAGTCGGGTTGTAACTCTTTGGTATCGACCACCTGAGCTTTTACTTGGTGCCACTTATTACGGTACAGCTGTAGATTTGTGGAGTACTGGCTGCATACTTGCTGAATTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACGGAGGTGGAACAGCTACATAAAATATTTAAACTCTGTGGCTCTCCTTCGGAGGATTATTGGAGGAAATCAAGGTTGCCTCATGCAACGATATTTAAGCCCCAACAACCATATAGACGTTGTGTTGCAGACACATTTAAGGATTTTCCTGCACCTGCTTTAGCTCTCATTGAGACCTTGCTCTCTATAGATCCTGCAGATCGTGGCTCTGCTGCTCTCGCCCTTAAAAGTGAATTTTTTTCAACAAAGCCACTACCTTGTGATCCTTCAAGCTTGCCAAAGTATCCTCCAAGCAAAGAATTTGATGCCAAAATAAGGGATGAGGAAGCTAGAAGACAAGGAGCAGTAGGAAGCAAGGGACACCGGCTTGACTTGCAACGAAAAGATAGGGATTCTCGAGCCGTCCCTGCACCTGATGCCAATGCTGAATTAGCCTCATCAATGCAGAAAAGACAAGGCCTGTCCAGTTCAAAGAGCCGGAGTGAGAAGTTTAACCCACATCCAGAAGAAGCTTCTGGCTTTCCAATTGATCCACCTAGACCTTCACAAGGAGCAGAAAGAATGGATTCTCAGGTGCGTCATCCTAAGAAAGCCTCACATTCAGGGCCACTTGCTCAGCGGGCTGCTTGGGCGAAAGCTAATAGGAACCCAGATGAACCTCCCAAAATTTCAACCGGGACCGAAACTTTTGCAACTTCAGGACTAGTAGCAGCTAGAAGAAGTATGCTGGCTGAAGATTGTAGGGAAAAATCTGATTCTTCACAAGGAGAGGTTCAAAAGCTAATTGGTAGGTTTCCCGGTTCCTTCAAAGAAACCTCAGAGTCGTCAATGCTACCGGACCAGAAGTTCTCAAATCACAGTATTGCAGGCTCACACGATAAAGAGAGGAGCAGCACTAAAGACCCTATAGTTGTGGGTTATGGCTCGAAGGGTCATAAGATTCATTATTCTGGTCCATTACTGGTTCCTTCCGGTAACATGGACCAAATGTTGAAGGACCACGACCGCCATATCCAAGAAGCAGTAAGACGAGCTCGGCTTGACAAGGCTAAGGTAAGGAAGATTCAAGCTGACGGGAAACAGGTGTCGACAAATTCATTATTCGTCTCAGGTCGTTAA 2124 45.53 MGCVCCKPSAIEDSKESPRDRVSSKTSSDLRVARLTSSSREEAYRAKDQYDGNDARVTLIEKQVNGSGRLPGENFERKREKMEHMTAQHPSMGRIPKAAEGDHIAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLCGLDHCHSHGVLHRDIKGSNLLIDNHGVLKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIETLLSIDPADRGSAALALKSEFFSTKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQGAVGSKGHRLDLQRKDRDSRAVPAPDANAELASSMQKRQGLSSSKSRSEKFNPHPEEASGFPIDPPRPSQGAERMDSQVRHPKKASHSGPLAQRAAWAKANRNPDEPPKISTGTETFATSGLVAARRSMLAEDCREKSDSSQGEVQKLIGRFPGSFKETSESSMLPDQKFSNHSIAGSHDKERSSTKDPIVVGYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKVRKIQADGKQVSTNSLFVSGR 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9416222 9422890 - MELO3C019411.2.1 Cme06g01197 330346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01197 707 PANTHER CELL DIVISION PROTEIN KINASE 1 689 - -
Cme06g01197 707 MobiDBLite consensus disorder prediction 12 27 - -
Cme06g01197 707 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Cme06g01197 707 MobiDBLite consensus disorder prediction 603 636 - -
Cme06g01197 707 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01197 707 SUPERFAMILY Protein kinase-like (PK-like) 125 423 IPR011009 -
Cme06g01197 707 SMART serkin_6 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01197 707 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Cme06g01197 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Cme06g01197 707 PANTHER CYCLIN-DEPENDENT KINASE 1 689 - -
Cme06g01197 707 MobiDBLite consensus disorder prediction 445 566 - -
Cme06g01197 707 CDD STKc_CDK9_like 131 415 - -
Cme06g01197 707 MobiDBLite consensus disorder prediction 604 621 - -
Cme06g01197 707 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Cme06g01197 707 MobiDBLite consensus disorder prediction 445 471 - -
Cme06g01197 707 MobiDBLite consensus disorder prediction 35 49 - -
Cme06g01197 707 MobiDBLite consensus disorder prediction 480 496 - -
Cme06g01197 707 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01197 707 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00041 Cme-Chr5:296340 Cme06g01197 Cme-Chr6:9416222 7.61E-121 dispersed
Cme06g01197 Cme-Chr6:9416222 Cme11g01212 Cme-Chr11:18344453 0 dispersed
Cme09g00238 Cme-Chr9:1806211 Cme06g01197 Cme-Chr6:9416222 0 dispersed
Cme06g01197 Cme-Chr6:9416222 Cme05g01749 Cme-Chr5:26533664 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64958 PF00069 Pkinase 9.40E-69 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01197 - - csv:101222182 1417.14