Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01204 ATGTTTGGGCGACGATTTCATCGAAAAAAATCCTCCAATGCCATGTCCATTGTAGAGCTTCTAGTGCACATGGATTGCGATGGATGTGAAGGTCGAATTCGAAGAGCGGTCTCCAAAATAGAAGGAGTACATAGCTTGGAAATAGACATGAACAAACAAAAGGTTACTGTAACTGGATATGTAGAGGAAAGAAAAGTGTTGAAGGTGGTGAGAGGGACGGGGCGAAAAGCGGAGCTATGGCCGTTCCCTTACGACAATGAATACTACCCATATGCATCGCAATACTATGACGAATCAACGTATGCTTCGACATATAATTATTATAGGCATGGTTTCAATGAAGGCGTTCATGGATACTTTCCAGATCCTTTATATTCAACTGTTAGTGATAACACTGTTCATCTTTTTAGCGAAGATAATGTTCATGCTTATTGTAGTATTATGTGA 447 40.04 MFGRRFHRKKSSNAMSIVELLVHMDCDGCEGRIRRAVSKIEGVHSLEIDMNKQKVTVTGYVEERKVLKVVRGTGRKAELWPFPYDNEYYPYASQYYDESTYASTYNYYRHGFNEGVHGYFPDPLYSTVSDNTVHLFSEDNVHAYCSIM 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9514427 9515491 + MELO3C019416.2.1 Cme06g01204 330353

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01204 148 CDD HMA 23 78 IPR006121 GO:0046872
Cme06g01204 148 Pfam Heavy-metal-associated domain 22 76 IPR006121 GO:0046872
Cme06g01204 148 SUPERFAMILY HMA, heavy metal-associated domain 14 81 IPR036163 GO:0046872
Cme06g01204 148 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 45 4 148 - -
Cme06g01204 148 Gene3D - 15 79 - -
Cme06g01204 148 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 4 148 IPR045181 GO:0046872
Cme06g01204 148 ProSiteProfiles Heavy-metal-associated domain profile. 16 79 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01204 - - - csv:101222899 307.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00015 Cme-Chr4:127517 Cme06g01204 Cme-Chr6:9514427 9.13E-24 dispersed
Cme06g01204 Cme-Chr6:9514427 Cme10g00193 Cme-Chr10:1309721 6.04E-35 dispersed
Cme08g02368 Cme-Chr8:30581825 Cme06g01204 Cme-Chr6:9514427 2.44E-12 dispersed
Cme06g01204 Cme-Chr6:9514427 Cme01g00321 Cme-Chr1:2431456 1.81E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g942 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g01204 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008749 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01204 Cme_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0