Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01215 ATGGGCAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGCGGTTCAGTCATCACCGTCCTCATCGCCACAGCTACCTCCGCAAGTTAGTACCAGTTCTCCTCCCATTAACAATAATGGGAATGGCTTGGTTGGTGGTGGGGGTGGTGGGGCTGTGGGAAAAGTGAAGAAGAAGGCTGGAGGATCTAGGCTGTGGATGCGTCTTGACCGGTGGGGGCAATCAGAGCTTTTAGAGTGGGACAAGAACGCTATAATCAGACGTGTTGGAATTCCGGCCAGGGATATGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAATATACTCGCCAGGGAAAAGGCTATGGTTGTTAATTTAGAGTTTATAAAAGCCATAGTTACTGCAGAAGAAGTCCTACTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTCGCTAAGACAGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAGGCTGCTGAAGGTGAGCAGTATGAGCTCCCATTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTAGTGTGCTTGTACTTAGATTCCAGCGTGGCAGACCTTGAGAGGGATGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATTTAGAACGTGTGAGAAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGTGTTCAGAAGGTGCGGGATGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTCGATGCTTTGATGGGAGGAGGTGGGGCTTCCAACAGCACAACTGCTGTCGTTCCTCATCTTCGTCGACTTAGTTCCAACAGGAGTGGCAGTGTGGTGACCAGCAATCTTTTGGATGATAATGACGTAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGCTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATTGACGACACCGAAGATTACGTCAACATTCAACTTGACAATCAAAGAAATGAACTCATTCAATTTCAGTTAACACTGACTATTGCTTCATTTGCCATAGCTGTTGAAACCTTAATCGCCGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGACAGATGGGGTGTTTGGGTACTTTGTCGGAGGTACTTCAGCAGGGTGTTTGTTGCTTTTCCTGCTTATTCTTGGATATGCAAAATGGAAGAAGCTTCTTGGTTCATGA 1332 45.5 MGKGPFSFRRSSSRRRPKKAVQSSPSSSPQLPPQVSTSSPPINNNGNGLVGGGGGGAVGKVKKKAGGSRLWMRLDRWGQSELLEWDKNAIIRRVGIPARDMRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCLYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALMGGGGASNSTTAVVPHLRRLSSNRSGSVVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYETDGVFGYFVGGTSAGCLLLFLLILGYAKWKKLLGS 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9770716 9777071 - MELO3C019432.2.1 Cme06g01215 330364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01215 443 Gene3D - 59 142 - -
Cme06g01215 443 Coils Coil 240 274 - -
Cme06g01215 443 MobiDBLite consensus disorder prediction 18 46 - -
Cme06g01215 443 CDD Mrs2_Mfm1p-like 71 440 IPR039204 -
Cme06g01215 443 Gene3D Magnesium transport protein CorA, transmembrane region 145 374 - -
Cme06g01215 443 ProSiteProfiles Pumilio RNA-binding repeat profile. 301 336 IPR001313 GO:0003723
Cme06g01215 443 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 443 - -
Cme06g01215 443 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 379 430 IPR045863 -
Cme06g01215 443 Pfam CorA-like Mg2+ transporter protein 244 435 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cme06g01215 443 Gene3D Magnesium transport protein CorA, transmembrane region 381 441 - -
Cme06g01215 443 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 443 IPR039204 -
Cme06g01215 443 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01722 Cme-Chr4:24694241 Cme06g01215 Cme-Chr6:9770716 1.48E-98 dispersed
Cme05g00459 Cme-Chr5:4198967 Cme06g01215 Cme-Chr6:9770716 4.69E-87 dispersed
Cme05g00518 Cme-Chr5:4841371 Cme06g01215 Cme-Chr6:9770716 1.44E-36 dispersed
Cme06g01215 Cme-Chr6:9770716 Cme12g00517 Cme-Chr12:8865759 7.99E-14 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01215 K16075 - csv:101203496 771.541