Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01215 ATGGGCAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGCGGTTCAGTCATCACCGTCCTCATCGCCACAGCTACCTCCGCAAGTTAGTACCAGTTCTCCTCCCATTAACAATAATGGGAATGGCTTGGTTGGTGGTGGGGGTGGTGGGGCTGTGGGAAAAGTGAAGAAGAAGGCTGGAGGATCTAGGCTGTGGATGCGTCTTGACCGGTGGGGGCAATCAGAGCTTTTAGAGTGGGACAAGAACGCTATAATCAGACGTGTTGGAATTCCGGCCAGGGATATGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAATATACTCGCCAGGGAAAAGGCTATGGTTGTTAATTTAGAGTTTATAAAAGCCATAGTTACTGCAGAAGAAGTCCTACTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTCGCTAAGACAGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAGGCTGCTGAAGGTGAGCAGTATGAGCTCCCATTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTAGTGTGCTTGTACTTAGATTCCAGCGTGGCAGACCTTGAGAGGGATGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATTTAGAACGTGTGAGAAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGTGTTCAGAAGGTGCGGGATGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTCGATGCTTTGATGGGAGGAGGTGGGGCTTCCAACAGCACAACTGCTGTCGTTCCTCATCTTCGTCGACTTAGTTCCAACAGGAGTGGCAGTGTGGTGACCAGCAATCTTTTGGATGATAATGACGTAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGCTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATTGACGACACCGAAGATTACGTCAACATTCAACTTGACAATCAAAGAAATGAACTCATTCAATTTCAGTTAACACTGACTATTGCTTCATTTGCCATAGCTGTTGAAACCTTAATCGCCGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGACAGATGGGGTGTTTGGGTACTTTGTCGGAGGTACTTCAGCAGGGTGTTTGTTGCTTTTCCTGCTTATTCTTGGATATGCAAAATGGAAGAAGCTTCTTGGTTCATGA 1332 45.5 MGKGPFSFRRSSSRRRPKKAVQSSPSSSPQLPPQVSTSSPPINNNGNGLVGGGGGGAVGKVKKKAGGSRLWMRLDRWGQSELLEWDKNAIIRRVGIPARDMRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCLYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALMGGGGASNSTTAVVPHLRRLSSNRSGSVVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYETDGVFGYFVGGTSAGCLLLFLLILGYAKWKKLLGS 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9770716 9777071 - MELO3C019432.2.1 Cme06g01215 330364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01215 443 Gene3D - 59 142 - -
Cme06g01215 443 Coils Coil 240 274 - -
Cme06g01215 443 MobiDBLite consensus disorder prediction 18 46 - -
Cme06g01215 443 CDD Mrs2_Mfm1p-like 71 440 IPR039204 -
Cme06g01215 443 Gene3D Magnesium transport protein CorA, transmembrane region 145 374 - -
Cme06g01215 443 ProSiteProfiles Pumilio RNA-binding repeat profile. 301 336 IPR001313 GO:0003723
Cme06g01215 443 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 443 - -
Cme06g01215 443 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 379 430 IPR045863 -
Cme06g01215 443 Pfam CorA-like Mg2+ transporter protein 244 435 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cme06g01215 443 Gene3D Magnesium transport protein CorA, transmembrane region 381 441 - -
Cme06g01215 443 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 443 IPR039204 -
Cme06g01215 443 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01215 K16075 MRS2, MFM1; magnesium transporter - csv:101203496 771.541
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01722 Cme-Chr4:24694241 Cme06g01215 Cme-Chr6:9770716 1.48E-98 dispersed
Cme05g00459 Cme-Chr5:4198967 Cme06g01215 Cme-Chr6:9770716 4.69E-87 dispersed
Cme05g00518 Cme-Chr5:4841371 Cme06g01215 Cme-Chr6:9770716 1.44E-36 dispersed
Cme06g01215 Cme-Chr6:9770716 Cme12g00517 Cme-Chr12:8865759 7.99E-14 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g01722 . 1 447 MRS2 Gene Family AT1G16010 84.6 2.5e-206 714.9
Cme05g00459 . 35 322 MRS2 Gene Family AT1G16010 50.3 2.8e-72 269.6
Cme05g00459 . 1 326 MRS2 Gene Family AT5G64560 66.9 3.3e-106 382.1
Cme05g00518 . 1 173 MRS2 Gene Family AT5G64560 71.8 1.7e-62 236.9
Cme01g01979 . 1 101 MRS2 Gene Family AT5G64560 80.4 2.5e-37 153.3
Cme01g00132 . 1 495 MRS2 Gene Family AT3G19640 63.5 1.4e-154 543.1
Cme06g01215 . 59 443 MRS2 Gene Family AT3G58970 69.4 4.0e-140 495.0
Cme04g01722 . 13 447 MRS2 Gene Family AT2G03620 53.3 4.1e-113 405.2
Cme03g01452 . 1 194 MRS2 Gene Family AT2G03620 66.5 3.6e-61 232.6
Cme05g00459 . 1 326 MRS2 Gene Family AT5G09690 64.0 7.7e-104 374.0
Cme04g01722 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.5e-78 288.1
Cme05g00518 . 1 172 MRS2 Gene Family AT5G09690 69.9 3.7e-58 222.2
Cme05g00459 . 34 292 MRS2 Gene Family AT5G09720 62.0 3.3e-77 285.4
Cme05g00518 . 23 172 MRS2 Gene Family AT5G09720 68.2 9.3e-48 187.6
Cme04g01722 . 1 447 MRS2 Gene Family AT1G80900 83.0 1.2e-200 696.0
Cme03g01452 . 1 194 MRS2 Gene Family AT1G80900 52.8 8.5e-45 178.3
Cme12g00517 . 16 458 MRS2 Gene Family AT5G22830 68.8 4.1e-159 558.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01215 Cme_Chr06 FPKM 2.493506 2.93863 0.0 0.555516 0.892958 0.0 0.0 0.422353 0.592492 0.303293