Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01217 ATGGCTTCTCGTTTCTGGACCCAGGGTGGTGGTAGTGGTTCTGATTCTGAAGCGGAGGAGAGTGACTATGGTGAAGAGCTTGATGACATTCAGGTTGATCCCAACGCCCAACCGAACAGAAGCAGATATCTGCAAGGAAATGCCAGTGATAGTGAAGATTCTGAAGATAAGAAGCGTACTGTTAGGTCGGCTAAAGATAAGCGTTTTGAGGAGATGTCTGCTACTGTGGATCAGATGAAAAATGCTATGAAGATCAATGATTGGGTAAGCCTGCAGGAGAGTTTTGATAAAATAAATAAGCAGCTTGAGAAAGTCATGCGTGTTACCGAGTCTGAGAAGGTGCCGACTCTTTATATTAAAGCACTTGTGATGCTAGAGGATTTCCTAAATGAAGCTATGGCTAATAAGGAAGCTAAGAAGAAAATGAGTACTAGTAATTCTAAGGCATTGAATTCAATGAAACAGAAGCTAAAGAAGAACAATAAGCAATATGAAGAGGTAATTACCAAGTATAGGGAGAATCCTGAGGTTGAGGAAGAAAAGGCTGATGAGATGGATGATGATGATGATGATGATGATGATGAAGAATCTGAATATGAGGATGATCCTTCTAAAATCATGTCTGATTCAGAGCCAGAGCCAGATATAGACGAGGAAGAAGATCTAGATGATCCAAGTCAAAACTGGGAGAAAAAGAAGAGCAAAAAAAACAAGCTCATGGATAAGCAGTTTATGAAGGATCCTAGTGAGATCACATGGGACACCGTGAACAAAAAATTTAAGGAAGTTGTGGCTGCTCGAGGTAGGAAGGGAACTGGAAGATTTGAGCAGGTTGAACAGCTTACATTCTTAACAAAAGTTGCCAAGACTCCTGCACAAAAGCTTGAGATTTTGTTCAGTGTTGTATCTGCTCAATTTGACGTGAATCCTGGTCTCAGTGGGCATATGCCTATCAGTGTGTGGAAGAAGTGTGTGCAAAACATGCTTTCTATAATTGACATTCTTGTGCATAATCCCAACATTGTGGTGGATGATATGGTAGAACCAGATGAGAATGAAAGCCAGAAGCCAGCTGACTATAAGGGAACAATTCGTGTTTGGGGAAACTTGGTTGCTTTTGTTGAGCGGATTGACACTGAGTTTTTTAAGAGTTTGCAGTGTATTGATCCACATACGCGTGAGTATGTTGAGAGGCTTAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGGATATTTGGAAAGAGTTGGGGATTACAAAGCAGCTTCAAAAGTTGCCTTGAGGCGTGTTGAACTGATTTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAGCTTGCAGAGCTGTCAGAAGATGATGGTGGAGATGCAAGTGATGAGGCTAAAGTGGTTGAGGAGAGTAGGGGCCCTGCTGCATTTATTGTCACTCCAGAGCTTGTACCTCGTAAACCCACCTTTCCAGAGAGTAGTAGGGCTTTTATGGACATTCTGGTAACCCTCATATACCAGTATGGAGATGAGCGCACCAAAGCACGAGCTATGCTTTGTGATATTTACCACCATGCTCTCTTGGATGAATTTTATATTTCTCGTGACTTGTTGCTGATGAGTCACTTACAGGATAGTATTCAACACTTGGACATCTCAACGCAGATCCTTTTCAATAGGGCAATGGCTCAACTTGGTTTATGTGGCTTTCGGGTTGGTCTGATCAGTGAAGGACATGGCTGTCTTTCAGAATTATATTCAGGTGGAAGGGTGAAGGAATTGCTTGCACAAGGTGTCTCACAAAGCCGATACCATGAAAAGACTCCAGAACAGGAAAGGCTCGAAAGAAGAAGGCAGATGCCGTACCACATGCACATAAATCTTGAGCTCCTGGAGGCTGTGCATTTAATATGTGCTATGCTGCTGGAAGTACCCAACATGGCAGGCAATGTTCACGATTCGAAGCGTAAAGTTATCAGTAAGAACTTTAGACGGTTACTAGAGGTGAGTGAGAGACAGACATTTACGGGTCCTCCTGAGAATGTCAGAGATCATGTAATGGCTGCTACCAGGGCCCTTCGTAAGGGTGATTTCCAGAAGGCTTATGATGTCATTGCATCTTTAGATGTATGGAAGCTACTCAGGAAGCGTAATGAAGTGCTGGAAATGGTTAAAGGAAAGATCAAGGAGGAGGCTCTGAGGACTTACCTTCTCACATATTCCTCATCCTACGATTCTCTGAGTTCGGACCAACTCACCCAAATGTTTGATCTTGCAGAGGGTCAAACACATAGTATCGTGAGCAAGATGATGATTAATGAGGAGCTCCATGCAAGTTGGGATCAGCCAAGTGGGTGCATCATCTTTCACGATGTTACTCACACCCGGTTACAGGGCCTGGCGTTCCAATTGGCTGATAAGTTGTCAATCCTTGCTGAAAGTAATGAGAGAGCAGTTGAGGCAAGAATTGGAGGAGGATTAGATTTACCAATGAGGCGAAGGGACAACCAAGAATATGGTGCTGGAGGAGCTGTAGGTGGGAGTAGCAGGTGGCCAGATAACATGTCTTATAATCAAGGAAGGCAAGGCGGTCCTAGTTCACGTGCAGGATACAGCAGTGGTGGGCGAGGCCAAGGTGGGGTTGGTGGATACTATAGAGACCGGATGGGCCAGTCTCGAGGAGGCAATGCAGGATACCAAAGCACCCGTTATCAAGATGCTGCATATGGGTCGGGGAGGACTGCTTATCAGTCGGGATCTTCCAGAGGATCCCAGATGGATGCTTCTGCTCGAATGGTCAGTCTTAACAAAGGCGTTCATGCTTAA 2826 44.09 MASRFWTQGGGSGSDSEAEESDYGEELDDIQVDPNAQPNRSRYLQGNASDSEDSEDKKRTVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLEDFLNEAMANKEAKKKMSTSNSKALNSMKQKLKKNNKQYEEVITKYRENPEVEEEKADEMDDDDDDDDDEESEYEDDPSKIMSDSEPEPDIDEEEDLDDPSQNWEKKKSKKNKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPISVWKKCVQNMLSIIDILVHNPNIVVDDMVEPDENESQKPADYKGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQGYLERVGDYKAASKVALRRVELIYYKPQEVYDAMRKLAELSEDDGGDASDEAKVVEESRGPAAFIVTPELVPRKPTFPESSRAFMDILVTLIYQYGDERTKARAMLCDIYHHALLDEFYISRDLLLMSHLQDSIQHLDISTQILFNRAMAQLGLCGFRVGLISEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAGNVHDSKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAYDVIASLDVWKLLRKRNEVLEMVKGKIKEEALRTYLLTYSSSYDSLSSDQLTQMFDLAEGQTHSIVSKMMINEELHASWDQPSGCIIFHDVTHTRLQGLAFQLADKLSILAESNERAVEARIGGGLDLPMRRRDNQEYGAGGAVGGSSRWPDNMSYNQGRQGGPSSRAGYSSGGRGQGGVGGYYRDRMGQSRGGNAGYQSTRYQDAAYGSGRTAYQSGSSRGSQMDASARMVSLNKGVHA 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9806808 9811822 - MELO3C019434.2.1 Cme06g01217 330366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01217 941 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 940 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cme06g01217 941 Pfam PCI domain 662 790 IPR000717 -
Cme06g01217 941 MobiDBLite consensus disorder prediction 1 15 - -
Cme06g01217 941 MobiDBLite consensus disorder prediction 1 69 - -
Cme06g01217 941 MobiDBLite consensus disorder prediction 179 202 - -
Cme06g01217 941 MobiDBLite consensus disorder prediction 158 178 - -
Cme06g01217 941 MobiDBLite consensus disorder prediction 912 931 - -
Cme06g01217 941 SMART PINT_4 723 811 IPR000717 -
Cme06g01217 941 MobiDBLite consensus disorder prediction 912 941 - -
Cme06g01217 941 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 864 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cme06g01217 941 Coils Coil 147 174 - -
Cme06g01217 941 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 723 811 - -
Cme06g01217 941 SUPERFAMILY Winged helix DNA-binding domain 721 793 IPR036390 -
Cme06g01217 941 MobiDBLite consensus disorder prediction 49 69 - -
Cme06g01217 941 MobiDBLite consensus disorder prediction 839 900 - -
Cme06g01217 941 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 940 - -
Cme06g01217 941 MobiDBLite consensus disorder prediction 139 237 - -
Cme06g01217 941 MobiDBLite consensus disorder prediction 851 873 - -
Cme06g01217 941 MobiDBLite consensus disorder prediction 34 48 - -
Cme06g01217 941 ProSiteProfiles PCI domain profile. 622 794 IPR000717 -
Cme06g01217 941 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 48 653 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01217 K03252 - csv:101203990 1716.05