Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01249 ATGGAGATGAATCTCCCTAACGGGGTAGGAGCGGCCGAGAAAAATGGGGAAGAGAAGAAGAAGGAAGACCAGAAGCAAGGAAGCGAAGATCATGACAACGACAGCGATAGTGATAGCGACATGCCGTCGTCCTTGAGCCTTAGAGAGCTTTCCAAGGTTATACTTCCACCTTTGGGAGTTTCAAGCTTTACTGATGGCAGTAAAGTTAAGTCTAATAGATGGATCATCTCTCCCATGAGCTCAAGATACAGGTGGTGGCAGTCGTTCATGGTTGTTTTGGTTGCTTACTCGGTGTGGGTCTACCCATTGGAAGTGGCGTTTCTGGACGCAATTCCTAGGCGAAAATTATTAATTGTTGATAGTATTGTCGATATCTTCTTCGCCATTGATATTGTCTTCACCTTCTTCGTTGCTTACATTGATCATCGCACTCAGCTTCTCGTTCGTGATTCTAAGAAGATAGCTATCAGGTACTTGTCAACATGGTTCTTGATGGATTTGGCATCAACAATCCCATTTGATACACTGGCCTATCTTTCCACAGGCAAATATGATCTTTGTCTCCCTTTTGCCCTCCTAGGATTGCTAAGATTTTGGCGATTGCGACGGGTCAAGCAATTTTTTACCAGGCTTGAGAAGGACATTAGATTCAGCTACTTTTGGGTTAGATGTGCTAGGCTCCTATCTGTCACTTTATTTTATGTCCACTGTGCCGGATGCGTCTACTACTTATTGGCTGACCGATATCCACATCAAGGGAAAACCTGGATTGGAACCTTATTTCCAAATTTCAAAGAGATTAGCTTTGGAGTGAGATATACTTCAGCCATGTATTGGTCTATCACCACAATGACAACTGTTGGTTATGGTGATCTTCATGCTGTGAACACCGTAGAGATGATCTTTATCATTTTCTACATGCTCTTCAATCTCGGGCTTACTGCTTACTTGATAGGTAACATGACAAACTTAGTTGTTGAAGGAACTCGCCGCACTATGGAATTTAGAAACAGCATTGAAATGGCATCAAACTTTGTTAACCGAAATCGCCTGCCTTCGAGGTTGAAGGAACACATATTGGCATACATGTGCTTGAGATTCAAGGCTGAGAGCCTAAACCAACAGCATCTGATTGAACAGCTTCCAAAGTCAATTTGCAAAAGCATATGTCAGCAATTGTTTTTGCCGACCGTGGAGAAAGTCTACCTCTTCAAGGGTGTTTCAAAGGAAACACTTGTGGTGCTGGTAGCGAAGATGAAAGCCGAGTATATACCGCCTAAGGAGGACGTGATAATACAAAATGACACTCCTGATGAAGTTTATATCATTGTGTCTGGGGAAATTGAAATTATTGACTGTGAGATGGATGTGGAACGGATTGTTGGGGCGCTACACTGTGGCAGTATGTTTGGGGAAGTAGGAGCACTTTGTTGCAAAAACCAAAATTTTACATACAGAACCAGAACTCTTTCACAGCTCTTGAAGCTGAAAACAAGTGTATTACAGGAAGCTATGAATTTCAAACAAGAAGACAGTATGGTCATTGTCAAGAACTTCCTTCAGGAGCGTGAGCTCAGCCACAAAATCACCATAGAAGGATCACCGGAAAAAGAGGTGCCGACGCTGATTGAAGAAAAGGATCAAAGTTTCAACTGGAAACACTCCATTGAATTAGATTTTGCTAGAGTGAACATATACAAAGGCCATCCAGTAGCCAGAAAACAGGCTTCTTGTGATGATCCTGGAAAGCTTATCAGGTTGCCACATTCAATGGAGGAGCTCAAAAAACTTGCAGGTGAAAAGTTTGGATTTGATGCTAGAAATGCTGTTTTGACAAATGAAGAAGGCTCTGAAATTGATTCTATTGATGTGATAAGGGATAATGATAAGATTTATTTTTCATAG 1905 41.84 MEMNLPNGVGAAEKNGEEKKKEDQKQGSEDHDNDSDSDSDMPSSLSLRELSKVILPPLGVSSFTDGSKVKSNRWIISPMSSRYRWWQSFMVVLVAYSVWVYPLEVAFLDAIPRRKLLIVDSIVDIFFAIDIVFTFFVAYIDHRTQLLVRDSKKIAIRYLSTWFLMDLASTIPFDTLAYLSTGKYDLCLPFALLGLLRFWRLRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFYVHCAGCVYYLLADRYPHQGKTWIGTLFPNFKEISFGVRYTSAMYWSITTMTTVGYGDLHAVNTVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEMASNFVNRNRLPSRLKEHILAYMCLRFKAESLNQQHLIEQLPKSICKSICQQLFLPTVEKVYLFKGVSKETLVVLVAKMKAEYIPPKEDVIIQNDTPDEVYIIVSGEIEIIDCEMDVERIVGALHCGSMFGEVGALCCKNQNFTYRTRTLSQLLKLKTSVLQEAMNFKQEDSMVIVKNFLQERELSHKITIEGSPEKEVPTLIEEKDQSFNWKHSIELDFARVNIYKGHPVARKQASCDDPGKLIRLPHSMEELKKLAGEKFGFDARNAVLTNEEGSEIDSIDVIRDNDKIYFS 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10104936 10113912 - MELO3C019454.2.1 Cme06g01249 330398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01249 634 MobiDBLite consensus disorder prediction 13 32 - -
Cme06g01249 634 ProSiteProfiles KHA domain profile. 562 634 IPR021789 -
Cme06g01249 634 ProSiteProfiles cAMP/cGMP binding motif profile. 403 522 IPR000595 -
Cme06g01249 634 Pfam KHA, dimerisation domain of potassium ion channel 562 633 IPR021789 -
Cme06g01249 634 MobiDBLite consensus disorder prediction 1 43 - -
Cme06g01249 634 Gene3D Jelly Rolls 370 539 IPR014710 -
Cme06g01249 634 SUPERFAMILY cAMP-binding domain-like 330 520 IPR018490 -
Cme06g01249 634 Pfam Ion transport protein 83 332 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme06g01249 634 PRINTS EAG/ELK/ERG potassium channel family signature 120 130 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme06g01249 634 PRINTS EAG/ELK/ERG potassium channel family signature 131 140 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme06g01249 634 PRINTS EAG/ELK/ERG potassium channel family signature 273 290 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme06g01249 634 PRINTS EAG/ELK/ERG potassium channel family signature 299 310 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme06g01249 634 PRINTS EAG/ELK/ERG potassium channel family signature 317 326 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme06g01249 634 SUPERFAMILY Voltage-gated potassium channels 78 326 - -
Cme06g01249 634 Pfam Cyclic nucleotide-binding domain 424 505 IPR000595 -
Cme06g01249 634 PANTHER POTASSIUM CHANNEL AKT1 557 633 IPR045319 GO:0005249|GO:0006813
Cme06g01249 634 PANTHER POTASSIUM CHANNEL AKT1 49 528 IPR045319 GO:0005249|GO:0006813
Cme06g01249 634 PANTHER POTASSIUM CHANNEL AKT2/3 557 633 - -
Cme06g01249 634 PANTHER POTASSIUM CHANNEL AKT2/3 49 528 - -
Cme06g01249 634 CDD CAP_ED 403 505 IPR000595 -
Cme06g01249 634 SMART cnmp_10 403 520 IPR000595 -
Cme06g01249 634 Gene3D - 84 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00367 Cme-Chr4:2916235 Cme06g01249 Cme-Chr6:10104936 3.23E-144 dispersed
Cme06g01249 Cme-Chr6:10104936 Cme12g01221 Cme-Chr12:20340316 7.13E-08 dispersed
Cme06g01249 Cme-Chr6:10104936 Cme06g01078 Cme-Chr6:7991880 6.10E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01249 K21867 - csv:101205212 1176.39