Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01252 ATGCAAAGACGGCAACAAATGATGAAGATTTTCAGTACCTTTCTTCTTCTTTGTTTACTCTCTATAACTTCAACCTCAGAAGCCACTCCAACCGCAAACCCCATATGCCCAATGGACCTTAACTATATCCTCAGAATCCCTTGGAATGCGACTGATTGCCGGAACCCCTTTTTTCAGACAACTGCCAAATCCGCCATGAATGATTCCTCCAAAATCCCTTGTTGTCAAACCCTTTTGTCCTTGTTTGGAATTGCTTTGGCCCAACACCTCAAAGAGACTTCTCTTTTCAATCTCCCAGACCTCCCTACATCCAATTCTTGCCTTCGCGATTTCCAATCGAAGCTCTCCTCGCTCTCCCTTCCCGACGACCTTGTTTCCCACTGCTTTGATCCTTTGCAATTTGTGATATCTGCTAGTGTCTGTGCTGGGATTCAAACTACTCGAGATTGGGTTTCGAAACTTGGTCAAAACTCGCCGCTTGATTTTGGGTGTAGGTCGGAACTTGTTGGTCCTGGTTGTGATGCTTGTCTCGCCGCTGGTTTGAAAGTTCAGACTATTTTGACTGGAATTGATGGTAATAAATCTCATTCTATGGATTGCTTTTACTTTGCTGTTCTTTATGCTGCTGGCATTGTTAATGAGTCTGGCCCTGAGGGCGACAGTGCATTAGATTGCATATTTAATTTGCCACTGAATATTGAAAAGGATTCAAAAAGTAAACATTCTGCTCTAGTTTATGGTCTTACTGCTGCTGCTATTGGAATTTTGGTTGTTTTTGTTCTGATGGGAATAGGATTTTGGTTTTACAAATGGAAAAAATTGGCTGAGAAGTCTAGTTTAGAGTTTGATGTGGAGTTGGATGAACAAGGGTCTAGGCCACATGCTAGGCCAAACACTGGATCAATTTGGTTTAAGATTCAGGAGCTTGAGAAGGCAACTGATAACTTCTCTTCAAAAAATTTCATTGGGAGAGGTGGGTTTGGTATAGTTTACAAAGGAACATTACCTGATGGAAGTATGGTGGCAGTCAAGAAAGTAATTGAATCAGATTTTCAAGGCAATGCAGAGTTTTGCAATGAGGTTGAAATAATCAGTAATTTGAAGCATAGAAATCTTGTTCCACTTAGAGGTTGTTGTGTCATCGATGGGAATGATGGTTATGATGAGGGAGCAAGTGAGAGATACCTTGTTTATGATTACATGCCGAATGGAAATCTTGATGATTATTTGTTCCCTATACCATATGATCAAGTTGGAACTGTTAAAAAATCATTGACGTGGCCTCAAAGGAAGAATATTATTTTGGATGTAGCAAAAGGCTTAGCTTATCTGCACTATGGAGTGAAACCTGCCATATATCACAGAGATATCAAGGCGACAAACATATTGCTAGATGCAGATATGAGAGCAAGAGTGGCAGATTTCGGGCTCGCCAAACAGAGCAGGGAAGGACAGTCTCATCTAACAACTCGAGTTGCAGGAACTCATGGGTATTTAGCCCCTGAATATGCACTTTATGGACAACTAACTGAGAAGAGTGATGTTTATAGCTTTGGAGTAGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGATTTCTCCTTGTCGTCATCACCACGTGCGTTCCTGATCACAGATTGGGCTTGGTCCTTGGTGAAAGCTGGAAAAATAGGAGATACTTTAGATCCTTCTCTACTGAAAGATGGAGATTCTTCTAATTCAAATCCAAGAGCCATTATGGAGAGATTCATTGCGGTTGGAATTTTATGTTCTCATGTGATGGTGGCTTTGAGACCCACCATTATGGAAGCTTTGAAAATGTTGGAAGGGGACATTGAAGTTCCCCAAATTTCTGATCGGCCGGTGCCTTATGGGCATCCTTCATTTGTTGGTGATGGCAGCAACTTCAGTATATCACCGACATTAAGTGGACATCAAATGCATAACGGTGATATGCTCAGATGA 1968 41.41 MQRRQQMMKIFSTFLLLCLLSITSTSEATPTANPICPMDLNYILRIPWNATDCRNPFFQTTAKSAMNDSSKIPCCQTLLSLFGIALAQHLKETSLFNLPDLPTSNSCLRDFQSKLSSLSLPDDLVSHCFDPLQFVISASVCAGIQTTRDWVSKLGQNSPLDFGCRSELVGPGCDACLAAGLKVQTILTGIDGNKSHSMDCFYFAVLYAAGIVNESGPEGDSALDCIFNLPLNIEKDSKSKHSALVYGLTAAAIGILVVFVLMGIGFWFYKWKKLAEKSSLEFDVELDEQGSRPHARPNTGSIWFKIQELEKATDNFSSKNFIGRGGFGIVYKGTLPDGSMVAVKKVIESDFQGNAEFCNEVEIISNLKHRNLVPLRGCCVIDGNDGYDEGASERYLVYDYMPNGNLDDYLFPIPYDQVGTVKKSLTWPQRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDFSLSSSPRAFLITDWAWSLVKAGKIGDTLDPSLLKDGDSSNSNPRAIMERFIAVGILCSHVMVALRPTIMEALKMLEGDIEVPQISDRPVPYGHPSFVGDGSNFSISPTLSGHQMHNGDMLR 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10227291 10229258 - MELO3C019461.2.1 Cme06g01252 330401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01252 655 Pfam SPARK 33 201 IPR043891 -
Cme06g01252 655 SMART serkin_6 316 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01252 655 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 21 653 - -
Cme06g01252 655 ProSitePatterns Protein kinases ATP-binding region signature. 322 345 IPR017441 GO:0005524
Cme06g01252 655 Gene3D Transferase(Phosphotransferase) domain 1 401 619 - -
Cme06g01252 655 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 653 - -
Cme06g01252 655 Pfam Protein kinase domain 318 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01252 655 Gene3D Phosphorylase Kinase; domain 1 281 400 - -
Cme06g01252 655 CDD STKc_IRAK 322 611 - -
Cme06g01252 655 ProSiteProfiles Protein kinase domain profile. 316 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01252 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Cme06g01252 655 SUPERFAMILY Protein kinase-like (PK-like) 294 610 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01252 Cme-Chr6:10227291 Cme12g00308 Cme-Chr12:4007837 6.11E-110 dispersed
Cme06g01252 Cme-Chr6:10227291 Cme04g01865 Cme-Chr4:26366240 9.84E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64959 PF00069 Pkinase 1.10E-42 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01252 - - csv:101212244 1278.85