Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01299 ATGGAGATTGATCTATCACTCAAAATAGATCATCACAAGGAAGAACACCATCATCATCATTTGATCAAACACCAAAAAACTGATCAACAACAACATCAAGATGATCATGATCATGATAAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGAAGAAATTGATATCGATCATCATGTTGTTCCTTCTACTACTTCTGGCTTGAAAGTGCTTTTGCCACATAACAATATTAATGTAGGAGAGATTTCAGAGTTACAAATGGAAATGGATCGAATCAAAGAAGAGAATAAGGCCTTGAGAAAAGCTGTGGAACAGACAATGAAAGATTATTATGATCTTGAAATGAAAATTGGTTTCTTTCAACAAAACAATAACCTCAACAACAAGCTGGAGTGTGATCATAACTTCCTATCCTTCCATGGAAATGAGAACAAAAGGCATGAAGAACCAACAAAACAAGACCTCGAACTCAGAGAAATGGCGAAGAAGAAGAGACGAGTCGGGTCGGCATTGAAGGAGGACGAAATGAGGGAGAGTGAACTAGGGTTATCATTAGGGCTCCATACAAAAAACAATAATAATGATTTAAAACAAGAAGACAATGATAGGGAAATATTAATAGAAGAAGAAAGAAGAGAAGTTAGGAACAAAGAAAGTTCAATAATAATGGAAAATTTCAATTCAATCCAAAACAAACCACAAAGGCCTGAATTGCAAGCAATGGCACCCCCACAAAACAGAAAAGCTAGGGTTTCTGTAAGAGCAAGATGTGAATCTGCCACCATGAATGATGGTTGTCAATGGAGGAAATATGGTCAAAAAATTGCGAAGGGAAATCCATGCCCTCGAGCATATTATCGCTGCACTGTTGCACCGGGATGTCCAGTTAGAAAACAGGTACAAAGATGCTTAGAAGATATGTCAATTCTAATAACAACCTACGAAGGAACACATAATCATCCTCTACCTGTTGGAGCAACAGCCATGGCTTCCACAGCTTCAGCAGCTTCTGCTTCCTTTATGCTCTTAGACTCATCTAATAATAATAATACCAATCTTTCAAATTCTCTTCATCAAAACCCTAATATTCTTAATTCTTCTTCTCCTTCTTTCCTCCAAACTCAAAACCCTAATAATCATCTTTTCACCCCATTATTCCCCACCTCCTCAACCTCCCACTTCCCCCATTCCTTTTACCATTCCAACTTTCAACCTAATCATCTTGTCAGTCCTCTTGACCGTCGCACCTGGAAACCGGTCGATGATAATAAGCCACCACCGTTGACGCCCGATGCCGTGTCTGCCATTGCTTCTGACCCTAAGTTTCGAGTTGCCGTTGCGGCCGCTATTTCTTCGCTCATTAACAAAGAGAATGAACACGTGACTACAACGGGAGAGACGGCCACGGATGGTAAAGGTGGTGGTGGCAGCGATAGTGATAGTGGAAGCAAGAAATGGGTTGTTGAATCCCTCTCATCAAAATCAAATGGTAATTGA 1494 39.76 MEIDLSLKIDHHKEEHHHHHLIKHQKTDQQQHQDDHDHDKEEEEEDEEEEEEIDIDHHVVPSTTSGLKVLLPHNNINVGEISELQMEMDRIKEENKALRKAVEQTMKDYYDLEMKIGFFQQNNNLNNKLECDHNFLSFHGNENKRHEEPTKQDLELREMAKKKRRVGSALKEDEMRESELGLSLGLHTKNNNNDLKQEDNDREILIEEERREVRNKESSIIMENFNSIQNKPQRPELQAMAPPQNRKARVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAASASFMLLDSSNNNNTNLSNSLHQNPNILNSSSPSFLQTQNPNNHLFTPLFPTSSTSHFPHSFYHSNFQPNHLVSPLDRRTWKPVDDNKPPPLTPDAVSAIASDPKFRVAVAAAISSLINKENEHVTTTGETATDGKGGGGSDSDSGSKKWVVESLSSKSNGN 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10822082 10825780 + MELO3C019494.2.1 Cme06g01299 330448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01299 497 MobiDBLite consensus disorder prediction 454 475 - -
Cme06g01299 497 SUPERFAMILY WRKY DNA-binding domain 254 322 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g01299 497 MobiDBLite consensus disorder prediction 452 497 - -
Cme06g01299 497 ProSiteProfiles WRKY domain profile. 256 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g01299 497 Pfam WRKY DNA -binding domain 262 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g01299 497 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 491 IPR044810 GO:0003700
Cme06g01299 497 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 2 491 - -
Cme06g01299 497 Gene3D WRKY domain 246 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme06g01299 497 MobiDBLite consensus disorder prediction 482 497 - -
Cme06g01299 497 SMART WRKY_cls 261 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme06g01299 497 MobiDBLite consensus disorder prediction 39 54 - -
Cme06g01299 497 MobiDBLite consensus disorder prediction 1 54 - -
Cme06g01299 497 Coils Coil 81 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01901 Cme-Chr2:25476555 Cme06g01299 Cme-Chr6:10822082 8.13E-44 dispersed
Cme06g01299 Cme-Chr6:10822082 Cme12g01756 Cme-Chr12:24233364 2.31E-50 dispersed
Cme06g01299 Cme-Chr6:10822082 Cme01g00436 Cme-Chr1:3169672 2.23E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41501 PF03106 WRKY 2.00E-24 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01299 - - cmo:103496139 837.41