Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme06g01299 | ATGGAGATTGATCTATCACTCAAAATAGATCATCACAAGGAAGAACACCATCATCATCATTTGATCAAACACCAAAAAACTGATCAACAACAACATCAAGATGATCATGATCATGATAAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGAAGAAATTGATATCGATCATCATGTTGTTCCTTCTACTACTTCTGGCTTGAAAGTGCTTTTGCCACATAACAATATTAATGTAGGAGAGATTTCAGAGTTACAAATGGAAATGGATCGAATCAAAGAAGAGAATAAGGCCTTGAGAAAAGCTGTGGAACAGACAATGAAAGATTATTATGATCTTGAAATGAAAATTGGTTTCTTTCAACAAAACAATAACCTCAACAACAAGCTGGAGTGTGATCATAACTTCCTATCCTTCCATGGAAATGAGAACAAAAGGCATGAAGAACCAACAAAACAAGACCTCGAACTCAGAGAAATGGCGAAGAAGAAGAGACGAGTCGGGTCGGCATTGAAGGAGGACGAAATGAGGGAGAGTGAACTAGGGTTATCATTAGGGCTCCATACAAAAAACAATAATAATGATTTAAAACAAGAAGACAATGATAGGGAAATATTAATAGAAGAAGAAAGAAGAGAAGTTAGGAACAAAGAAAGTTCAATAATAATGGAAAATTTCAATTCAATCCAAAACAAACCACAAAGGCCTGAATTGCAAGCAATGGCACCCCCACAAAACAGAAAAGCTAGGGTTTCTGTAAGAGCAAGATGTGAATCTGCCACCATGAATGATGGTTGTCAATGGAGGAAATATGGTCAAAAAATTGCGAAGGGAAATCCATGCCCTCGAGCATATTATCGCTGCACTGTTGCACCGGGATGTCCAGTTAGAAAACAGGTACAAAGATGCTTAGAAGATATGTCAATTCTAATAACAACCTACGAAGGAACACATAATCATCCTCTACCTGTTGGAGCAACAGCCATGGCTTCCACAGCTTCAGCAGCTTCTGCTTCCTTTATGCTCTTAGACTCATCTAATAATAATAATACCAATCTTTCAAATTCTCTTCATCAAAACCCTAATATTCTTAATTCTTCTTCTCCTTCTTTCCTCCAAACTCAAAACCCTAATAATCATCTTTTCACCCCATTATTCCCCACCTCCTCAACCTCCCACTTCCCCCATTCCTTTTACCATTCCAACTTTCAACCTAATCATCTTGTCAGTCCTCTTGACCGTCGCACCTGGAAACCGGTCGATGATAATAAGCCACCACCGTTGACGCCCGATGCCGTGTCTGCCATTGCTTCTGACCCTAAGTTTCGAGTTGCCGTTGCGGCCGCTATTTCTTCGCTCATTAACAAAGAGAATGAACACGTGACTACAACGGGAGAGACGGCCACGGATGGTAAAGGTGGTGGTGGCAGCGATAGTGATAGTGGAAGCAAGAAATGGGTTGTTGAATCCCTCTCATCAAAATCAAATGGTAATTGA | 1494 | 39.76 | MEIDLSLKIDHHKEEHHHHHLIKHQKTDQQQHQDDHDHDKEEEEEDEEEEEEIDIDHHVVPSTTSGLKVLLPHNNINVGEISELQMEMDRIKEENKALRKAVEQTMKDYYDLEMKIGFFQQNNNLNNKLECDHNFLSFHGNENKRHEEPTKQDLELREMAKKKRRVGSALKEDEMRESELGLSLGLHTKNNNNDLKQEDNDREILIEEERREVRNKESSIIMENFNSIQNKPQRPELQAMAPPQNRKARVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAASASFMLLDSSNNNNTNLSNSLHQNPNILNSSSPSFLQTQNPNNHLFTPLFPTSSTSHFPHSFYHSNFQPNHLVSPLDRRTWKPVDDNKPPPLTPDAVSAIASDPKFRVAVAAAISSLINKENEHVTTTGETATDGKGGGGSDSDSGSKKWVVESLSSKSNGN | 497 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 10822082 | 10825780 | + | MELO3C019494.2.1 | Cme06g01299 | 330448 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme06g01299 | 497 | MobiDBLite | consensus disorder prediction | 454 | 475 | - | - | |
Cme06g01299 | 497 | SUPERFAMILY | WRKY DNA-binding domain | 254 | 322 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g01299 | 497 | MobiDBLite | consensus disorder prediction | 452 | 497 | - | - | |
Cme06g01299 | 497 | ProSiteProfiles | WRKY domain profile. | 256 | 322 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g01299 | 497 | Pfam | WRKY DNA -binding domain | 262 | 320 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g01299 | 497 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 2 | 491 | IPR044810 | GO:0003700 | |
Cme06g01299 | 497 | PANTHER | WRKY TRANSCRIPTION FACTOR 9-RELATED | 2 | 491 | - | - | |
Cme06g01299 | 497 | Gene3D | WRKY domain | 246 | 323 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g01299 | 497 | MobiDBLite | consensus disorder prediction | 482 | 497 | - | - | |
Cme06g01299 | 497 | SMART | WRKY_cls | 261 | 321 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme06g01299 | 497 | MobiDBLite | consensus disorder prediction | 39 | 54 | - | - | |
Cme06g01299 | 497 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Cme06g01299 | 497 | Coils | Coil | 81 | 108 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01901 | Cme-Chr2:25476555 | Cme06g01299 | Cme-Chr6:10822082 | 8.13E-44 | dispersed | |
Cme06g01299 | Cme-Chr6:10822082 | Cme12g01756 | Cme-Chr12:24233364 | 2.31E-50 | dispersed | |
Cme06g01299 | Cme-Chr6:10822082 | Cme01g00436 | Cme-Chr1:3169672 | 2.23E-53 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41501 | PF03106 | WRKY | 2.00E-24 | CL0274 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme06g01299 | - | - | cmo:103496139 | 837.41 |