Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01306 ATGTCATTCCGAAGCATTGTTCGTGATGTGAGGGATAGTATTGGGAGCTTATCCAGACGGGGTTTCGAGGTCAAGTTGAATGGTCATCATAGAGGAAAGTCCAATGCATCGTCGCCGAATGATCTACATGACCAGCCACCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTTATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTTGTTGCTTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGTCCAGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCATTGAAGCAGCCAGGACCGCGTGATGGATCTGTACAGTGCTTCATTAAGAGAGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAGTTTCTTCTTTCTGCGAAGCGTACACGAAGAACTACTAGCACGGAGTATATTATCTCAATGGATGCCGAAAACATTTCGAGATCAAGTAGCTCCTACATTGGAAAACTGAGGTCGAATTTTCTTGGAACAAAATTCATTGTTTATGATACTCAACCTCCGTACACTGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTTTCACCAAAAGTCCCTACTGGCAGTTATAACATAGCCCATATAAGTTATGAATTAAACGTCTTAGGCACACGAGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTCGATGCCGGTGGCACTGTTCCAGGCCAACCTGAGCTCCTTCCTCCCAACTCCCTCGACGACTCGTTCCGGAGTGCATCCTTCTCCAAAGCCATAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCCGAAATTGGGAGAGCCGCATTGGATGGTGATGAGGAGGGAAAGATGAGACCTTTGGTCCTCAAAAACAAGCCCCCAAGATGGCACGAACAGCTGCAATGTTGGTGCCTCAACTTTCGTGGGCGAGTTACCGTTGCATCAGTGAAGAACTTTCAGTTGATTGCAGCAATACAACCAGCTGCTGGGGCTCCAACTCCATCTCAACCAGGCCCACCCGAGCACGACAAGATCATTCTTCAATTTGGGAAGGTTGGTAAAGACATGTTCACGATGGATTATCGATATCCGTTGTCTGCTTTTCAGGCCTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 46.15 MSFRSIVRDVRDSIGSLSRRGFEVKLNGHHRGKSNASSPNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKAIDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10907911 10911441 + MELO3C019498.2.1 Cme06g01306 330455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01306 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cme06g01306 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cme06g01306 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cme06g01306 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Cme06g01306 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cme06g01306 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Cme06g01306 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Cme06g01306 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Cme06g01306 428 Gene3D - 49 101 - -
Cme06g01306 428 PANTHER TUBBY-RELATED 1 428 - -
Cme06g01306 428 SUPERFAMILY F-box domain 43 97 IPR036047 GO:0005515
Cme06g01306 428 Pfam Tub family 115 423 IPR000007 -
Cme06g01306 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Cme06g01306 428 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 428 - -
Cme06g01306 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Cme06g01306 428 Pfam F-box domain 54 100 IPR001810 GO:0005515
Cme06g01306 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00617 Cme-Chr3:10036402 Cme06g01306 Cme-Chr6:10907911 0 dispersed
Cme06g00687 Cme-Chr6:4481950 Cme06g01306 Cme-Chr6:10907911 2.62E-152 dispersed
Cme06g01306 Cme-Chr6:10907911 Cme08g00854 Cme-Chr8:5627200 1.51E-148 dispersed
Cme06g01306 Cme-Chr6:10907911 Cme07g01658 Cme-Chr7:22249029 1.30E-154 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41502 PF01167 Tub 8.00E-117 CL0395 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01306 K19600 - csv:101216314 864.759