Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01306 ATGTCATTCCGAAGCATTGTTCGTGATGTGAGGGATAGTATTGGGAGCTTATCCAGACGGGGTTTCGAGGTCAAGTTGAATGGTCATCATAGAGGAAAGTCCAATGCATCGTCGCCGAATGATCTACATGACCAGCCACCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTTATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTTGTTGCTTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGTCCAGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCATTGAAGCAGCCAGGACCGCGTGATGGATCTGTACAGTGCTTCATTAAGAGAGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAGTTTCTTCTTTCTGCGAAGCGTACACGAAGAACTACTAGCACGGAGTATATTATCTCAATGGATGCCGAAAACATTTCGAGATCAAGTAGCTCCTACATTGGAAAACTGAGGTCGAATTTTCTTGGAACAAAATTCATTGTTTATGATACTCAACCTCCGTACACTGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTTTCACCAAAAGTCCCTACTGGCAGTTATAACATAGCCCATATAAGTTATGAATTAAACGTCTTAGGCACACGAGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTCGATGCCGGTGGCACTGTTCCAGGCCAACCTGAGCTCCTTCCTCCCAACTCCCTCGACGACTCGTTCCGGAGTGCATCCTTCTCCAAAGCCATAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCCGAAATTGGGAGAGCCGCATTGGATGGTGATGAGGAGGGAAAGATGAGACCTTTGGTCCTCAAAAACAAGCCCCCAAGATGGCACGAACAGCTGCAATGTTGGTGCCTCAACTTTCGTGGGCGAGTTACCGTTGCATCAGTGAAGAACTTTCAGTTGATTGCAGCAATACAACCAGCTGCTGGGGCTCCAACTCCATCTCAACCAGGCCCACCCGAGCACGACAAGATCATTCTTCAATTTGGGAAGGTTGGTAAAGACATGTTCACGATGGATTATCGATATCCGTTGTCTGCTTTTCAGGCCTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 46.15 MSFRSIVRDVRDSIGSLSRRGFEVKLNGHHRGKSNASSPNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKAIDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10907911 10911441 + MELO3C019498.2.1 Cme06g01306 330455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01306 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cme06g01306 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cme06g01306 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cme06g01306 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Cme06g01306 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cme06g01306 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Cme06g01306 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Cme06g01306 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Cme06g01306 428 Gene3D - 49 101 - -
Cme06g01306 428 PANTHER TUBBY-RELATED 1 428 - -
Cme06g01306 428 SUPERFAMILY F-box domain 43 97 IPR036047 GO:0005515
Cme06g01306 428 Pfam Tub family 115 423 IPR000007 -
Cme06g01306 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Cme06g01306 428 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 428 - -
Cme06g01306 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Cme06g01306 428 Pfam F-box domain 54 100 IPR001810 GO:0005515
Cme06g01306 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01306 K19600 TUB, TULP; tubby and related proteins - csv:101216314 864.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00617 Cme-Chr3:10036402 Cme06g01306 Cme-Chr6:10907911 0 dispersed
Cme06g00687 Cme-Chr6:4481950 Cme06g01306 Cme-Chr6:10907911 2.62E-152 dispersed
Cme06g01306 Cme-Chr6:10907911 Cme08g00854 Cme-Chr8:5627200 1.51E-148 dispersed
Cme06g01306 Cme-Chr6:10907911 Cme07g01658 Cme-Chr7:22249029 1.30E-154 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g00617 . 1 430 TUB Transcription Factor Family AT1G76900 72.5 1.1e-177 619.8
Cme03g00315 . 1 432 TUB Transcription Factor Family AT1G76900 68.9 4.3e-169 591.3
Cme06g01306 . 1 428 TUB Transcription Factor Family AT1G76900 69.7 1.3e-168 589.7
Cme07g01658 . 1 414 TUB Transcription Factor Family AT1G76900 50.2 1.6e-115 413.3
Cme06g00687 CCT,ECH 13 387 TUB Transcription Factor Family AT1G76900 51.4 2.9e-112 402.5
Cme06g01306 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 7.8e-102 367.1
Cme03g00315 . 175 432 TUB Transcription Factor Family AT1G25280 70.8 1.3e-93 339.7
Cme03g00617 . 173 430 TUB Transcription Factor Family AT1G25280 67.9 1.1e-92 336.7
Cme06g00687 CCT,ECH 154 387 TUB Transcription Factor Family AT1G25280 53.9 9.3e-71 263.8
Cme07g01658 . 177 414 TUB Transcription Factor Family AT1G25280 56.2 9.3e-71 263.8
Cme04g00548 . 180 411 TUB Transcription Factor Family AT1G25280 55.3 8.7e-69 257.3
Cme08g00854 . 176 414 TUB Transcription Factor Family AT1G25280 51.3 6.5e-64 241.1
Cme06g00687 CCT,ECH 98 387 TUB Transcription Factor Family AT5G18680 62.8 2.9e-97 352.1
Cme03g00617 . 112 430 TUB Transcription Factor Family AT5G18680 52.6 6.2e-84 307.8
Cme03g00315 . 112 432 TUB Transcription Factor Family AT5G18680 52.1 3.1e-83 305.4
Cme06g01306 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 1.2e-82 303.5
Cme07g01658 . 115 414 TUB Transcription Factor Family AT5G18680 52.9 3.5e-79 292.0
Cme04g00548 . 116 411 TUB Transcription Factor Family AT5G18680 50.5 1.6e-76 283.1
Cme07g01369 . 115 383 TUB Transcription Factor Family AT5G18680 50.2 7.4e-69 257.7
Cme07g01658 . 1 414 TUB Transcription Factor Family AT2G18280 62.1 2.4e-144 508.8
Cme08g00854 . 1 414 TUB Transcription Factor Family AT2G18280 60.1 1.1e-136 483.4
Cme04g00548 . 1 411 TUB Transcription Factor Family AT2G18280 58.2 8.2e-124 440.7
Cme06g01306 . 1 428 TUB Transcription Factor Family AT2G18280 53.4 1.2e-119 426.8
Cme03g00617 . 1 430 TUB Transcription Factor Family AT2G18280 52.9 1.5e-117 419.9
Cme06g00687 CCT,ECH 1 387 TUB Transcription Factor Family AT2G18280 54.3 1.3e-116 416.8
Cme03g00315 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.4e-112 403.3
Cme07g01369 . 52 383 TUB Transcription Factor Family AT2G18280 51.3 8.8e-94 340.9
Cme06g00687 CCT,ECH 1 387 TUB Transcription Factor Family AT2G47900 68.5 1.5e-160 562.8
Cme03g00617 . 1 430 TUB Transcription Factor Family AT2G47900 55.5 2.9e-132 468.8
Cme06g01306 . 1 428 TUB Transcription Factor Family AT2G47900 56.7 1.2e-130 463.4
Cme03g00315 . 1 432 TUB Transcription Factor Family AT2G47900 55.7 7.9e-130 460.7
Cme07g01658 . 1 414 TUB Transcription Factor Family AT2G47900 55.9 7.2e-123 437.6
Cme04g00548 . 10 411 TUB Transcription Factor Family AT2G47900 55.7 1.5e-117 419.9
Cme08g00854 . 1 414 TUB Transcription Factor Family AT2G47900 51.4 1.1e-112 403.7
Cme07g01369 . 50 383 TUB Transcription Factor Family AT2G47900 51.4 8.5e-100 360.9
Cme11g01977 CCT,ECH 1 228 TUB Transcription Factor Family AT2G47900 56.5 1.6e-74 276.9
Cme01g02537 . 82 260 TUB Transcription Factor Family AT1G16070 52.7 4.0e-51 198.7
Cme03g00617 . 67 430 TUB Transcription Factor Family AT1G43640 70.8 9.8e-148 520.0
Cme06g01306 . 66 428 TUB Transcription Factor Family AT1G43640 68.0 6.3e-147 517.3
Cme03g00315 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 2.0e-140 495.7
Cme06g00687 CCT,ECH 49 387 TUB Transcription Factor Family AT1G43640 53.4 2.1e-105 379.4
Cme04g00548 . 69 411 TUB Transcription Factor Family AT1G43640 50.5 3.4e-100 362.1
Cme07g01658 . 68 414 TUB Transcription Factor Family AT1G43640 50.3 7.1e-98 354.4
Cme08g00854 . 67 414 TUB Transcription Factor Family AT1G43640 50.1 4.8e-94 341.7
Cme04g00548 . 34 411 TUB Transcription Factor Family AT1G47270 63.9 5.4e-136 481.1
Cme07g01658 . 34 414 TUB Transcription Factor Family AT1G47270 58.3 4.0e-123 438.3
Cme08g00854 . 33 414 TUB Transcription Factor Family AT1G47270 56.3 2.4e-120 429.1
Cme06g01306 . 1 428 TUB Transcription Factor Family AT1G47270 52.3 2.6e-114 409.1
Cme03g00617 . 30 430 TUB Transcription Factor Family AT1G47270 52.2 8.4e-113 404.1
Cme03g00315 . 48 432 TUB Transcription Factor Family AT1G47270 54.5 3.2e-112 402.1
Cme06g00687 CCT,ECH 1 387 TUB Transcription Factor Family AT1G47270 50.2 2.4e-104 375.9
Cme07g01369 . 1 383 TUB Transcription Factor Family AT1G53320 71.9 3.9e-155 544.7
Cme07g01658 . 20 414 TUB Transcription Factor Family AT1G53320 51.4 2.0e-103 372.9
Cme06g00687 CCT,ECH 98 387 TUB Transcription Factor Family AT3G06380 63.8 2.8e-97 352.1
Cme06g01306 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 5.7e-82 301.2
Cme03g00617 . 116 430 TUB Transcription Factor Family AT3G06380 52.1 8.2e-81 297.4
Cme03g00315 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 2.4e-80 295.8
Cme07g01658 . 119 414 TUB Transcription Factor Family AT3G06380 54.1 6.9e-80 294.3
Cme04g00548 . 120 411 TUB Transcription Factor Family AT3G06380 52.4 2.2e-78 289.3
Cme08g00854 . 118 414 TUB Transcription Factor Family AT3G06380 50.5 1.8e-75 279.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41502 PF01167 Tub 8.00E-117 CL0395 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01306 Cme_Chr06 FPKM 19.017014 20.796024 43.479523 42.290565 100.321938 97.196533 100.323364 59.152897 59.621262 57.525196