Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01334 ATGAGCATTACCGCGAATCAAAGAGGGTCCCGATCATGGGCCACCGCCGAGGAGTTGCCGGTGTCCAGTGGGGCTCCGATGCCGGCCAAGAAAAAATGGTCAAATGCTATGCCTCTGTTCATCGCTCTCGTCGTCGTAGCAGAGATTATCTTTCTTGGTCGCCTTGATGTCGCTAAAAATGTAGCTATGGTCGATTCATGGGCTGATTTGTTCTATCGTTCGCCGCCTCCCCTTGCACTGATCGACGGAGGCGATGATTTGAATTCCCGGTTCATTGACGGCGACCGGATTTCGGAATTGGGGATTTGTGAGGAGTGGTTGGAGAAAGAAGACGCTGTGACGTATTCTAGGGACTTCCAAAAGGATCCGATTTTGGTTTCTGGGTCTGATGAGGGGAGGAAGTCTTGTGCCGTAGAATGTGAATTTCAGGTCAGTCCAAGTAAGGATCCAGATGCTGCTTTTGGTTTAAATCACCAGGGTGGAATACCCTCAATTATTCGATCCATGGAATCATCTATATATTATGCAGATATCAAGATCGCCCAGGCACGACGGAATGGCTATAGTATAGTAATGACCACCAGTCTCTCATCAGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTACGATATCATGGCTCCAGTTCAGGCAAAGAGTGAGAAAGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCTCGTAACTTCCGCCTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACATCACAATAGATTCCTATGGTTCTTGTCACAGAAATCGTGATGGAAGCACAGTGAACAAATTGGAGGCTCTAAAGCGCTACAAGTTCAGCTTGGCTTTTGAGAATTCCAACGAGGAAGATTATGTGACAGAAAAATTTTTCCAATCTCTAGTTGCTGGAGCTATTCCAGTGGTTATTGGAGCTCCAAACATTCAAGATTTTGCTCCATCACCTGCTTCACTTTTGCATATCGGGGAACTTTCAGATGTTGAGTCAGTTGCCAACTCTATGAAATACCTTGCAGCAAATCCTGAGGCATTCAACAATTCTCTGAGGTGGAAATATGAGGGTCCATCTGATTCTTTCAAAGCACTATTTGATATGGGAGCAGTTCATTCGTCATGTCGCCTTTGTATTCACGTGGCAACTGGTATTCATGAGACCGAAGAGAAGGGTTTAGCGTTCAAAAATCGACCATGTAAATGCACCAGAGGTTCTGAAACCGTTCATCACTTGTATGTTAGAGAAAGAGGAAGGTTTAATTCTGAGTCCATTTTCTTAAGGTCGAGTAATCTGACGGTTGAAGGGCTGGCCTCAGCAGTGATTTCGAAGTTCAATTCTCTGAAGCACGAACCAATATGGAAGCAGGAGAGGCCTAAAAGCTTAAAAGGAGGGGATGAATTAAGGTTGTACAAAATATATCCAGTTGGGTTGACCCAGAGGCAAGCTTTATATACCTTCAGATTTAAAGGGGACTCTGGTTTCAGAAGATACGTGGAAGATAACCCTTGTGCTAAACTTGAAGCCATTTTTGTATAG 1545 44.98 MSITANQRGSRSWATAEELPVSSGAPMPAKKKWSNAMPLFIALVVVAEIIFLGRLDVAKNVAMVDSWADLFYRSPPPLALIDGGDDLNSRFIDGDRISELGICEEWLEKEDAVTYSRDFQKDPILVSGSDEGRKSCAVECEFQVSPSKDPDAAFGLNHQGGIPSIIRSMESSIYYADIKIAQARRNGYSIVMTTSLSSDVPVGYFSWAEYDIMAPVQAKSEKALAAAFISNCGARNFRLEALEALEKLNITIDSYGSCHRNRDGSTVNKLEALKRYKFSLAFENSNEEDYVTEKFFQSLVAGAIPVVIGAPNIQDFAPSPASLLHIGELSDVESVANSMKYLAANPEAFNNSLRWKYEGPSDSFKALFDMGAVHSSCRLCIHVATGIHETEEKGLAFKNRPCKCTRGSETVHHLYVRERGRFNSESIFLRSSNLTVEGLASAVISKFNSLKHEPIWKQERPKSLKGGDELRLYKIYPVGLTQRQALYTFRFKGDSGFRRYVEDNPCAKLEAIFV 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11263296 11282410 + MELO3C019516.2.1 Cme06g01334 330483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01334 514 MobiDBLite consensus disorder prediction 1 24 - -
Cme06g01334 514 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 31 492 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cme06g01334 514 Gene3D - 167 363 IPR038577 -
Cme06g01334 514 MobiDBLite consensus disorder prediction 1 17 - -
Cme06g01334 514 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 114 385 - -
Cme06g01334 514 PANTHER BNAA06G03030D PROTEIN 31 492 - -
Cme06g01334 514 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 220 385 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01334 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - csv:101202837 979.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00708 Cme-Chr2:8523222 Cme06g01334 Cme-Chr6:11263296 7.12E-69 transposed
Cme03g01095 Cme-Chr3:20388597 Cme06g01334 Cme-Chr6:11263296 1.11E-14 transposed
Cme11g01568 Cme-Chr11:23202113 Cme06g01334 Cme-Chr6:11263296 1.05E-68 transposed
Cme01g00052 Cme-Chr1:410903 Cme06g01334 Cme-Chr6:11263296 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT1G14080 55.9 2.3e-153 539.3
Cme12g01977 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.4 3.7e-151 531.9
Cme10g00393 . 99 566 Xyloglucan Fucosyltransferase1 AT1G14100 59.4 2.0e-162 569.3
Cme12g01977 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 5.4e-160 561.2
Cme10g00393 . 79 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.1 2.9e-139 492.3
Cme12g01977 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 6.2e-134 474.6
Cme06g01334 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.9 1.7e-182 636.0
Cme01g00052 . 128 455 Xyloglucan Fucosyltransferase1 AT1G49710 75.1 1.2e-148 523.5
Cme03g01095 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 3.2e-168 588.2
Cme10g00393 . 97 539 Xyloglucan Fucosyltransferase1 AT1G74420 51.6 9.8e-123 437.6
Cme10g00393 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.7 8.6e-183 637.1
Cme12g01977 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.3 1.4e-169 593.2
Cme07g01442 . 40 521 Xyloglucan Fucosyltransferase1 AT2G03210 50.3 1.1e-137 487.3
Cme10g00393 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 62.5 5.1e-196 681.0
Cme12g01977 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.8 1.6e-189 659.4
Cme07g01442 . 28 521 Xyloglucan Fucosyltransferase1 AT2G03220 50.8 1.2e-147 520.4
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 55.0 3.4e-154 542.0
Cme12g01977 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.8 2.0e-146 516.2
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.5 9.3e-147 517.3
Cme12g01977 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 2.6e-141 499.2
Cme10g00393 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 1.3e-148 523.5
Cme12g01977 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.3 5.7e-144 508.1
Cme06g01334 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 8.9e-184 640.2
Cme01g00052 . 128 455 Xyloglucan Fucosyltransferase1 AT3G19280 76.8 3.1e-152 535.4
Cme10g00393 . 97 539 Xyloglucan Fucosyltransferase1 AT1G74420 51.6 9.8e-123 437.6
Cme10g00393 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.7 8.6e-183 637.1
Cme12g01977 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.3 1.4e-169 593.2
Cme07g01442 . 40 521 Xyloglucan Fucosyltransferase1 AT2G03210 50.3 1.1e-137 487.3
Cme10g00393 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 62.5 5.1e-196 681.0
Cme12g01977 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.8 1.6e-189 659.4
Cme07g01442 . 28 521 Xyloglucan Fucosyltransferase1 AT2G03220 50.8 1.2e-147 520.4
Cme10g00393 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.7 8.6e-183 637.1
Cme12g01977 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.3 1.4e-169 593.2
Cme07g01442 . 40 521 Xyloglucan Fucosyltransferase1 AT2G03210 50.3 1.1e-137 487.3
Cme10g00393 . 97 539 Xyloglucan Fucosyltransferase1 AT1G74420 51.6 9.8e-123 437.6
Cme10g00393 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 1.3e-148 523.5
Cme12g01977 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.3 5.7e-144 508.1
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.5 9.3e-147 517.3
Cme12g01977 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 2.6e-141 499.2
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT1G14080 55.9 2.3e-153 539.3
Cme12g01977 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.4 3.7e-151 531.9
Cme10g00393 . 99 566 Xyloglucan Fucosyltransferase1 AT1G14100 59.4 2.0e-162 569.3
Cme12g01977 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 5.4e-160 561.2
Cme10g00393 . 79 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.1 2.9e-139 492.3
Cme12g01977 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 6.2e-134 474.6
Cme10g00393 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 55.0 3.4e-154 542.0
Cme12g01977 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.8 2.0e-146 516.2
Cme06g01334 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 8.9e-184 640.2
Cme01g00052 . 128 455 Xyloglucan Fucosyltransferase1 AT3G19280 76.8 3.1e-152 535.4
Cme06g01334 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.9 1.7e-182 636.0
Cme01g00052 . 128 455 Xyloglucan Fucosyltransferase1 AT1G49710 75.1 1.2e-148 523.5
Cme03g01095 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 3.2e-168 588.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01334 Cme_Chr06 FPKM 0.298891 0.0 2.769334 3.289615 4.181626 3.711305 4.855158 3.818637 4.396254 3.642862