Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01335 ATGGCCGCCACGGCACTGAGTAGAGCTTTGTTTCTAATGGGGTTTCTTCTCTTTCTTCAACTTCAGCTTCCTGAAACAATGGCGGATTGTCCCTTGGACTTGAGTGGATCAAACTTTACTTTAGTTGCCTCTATTTGCTCCAACCCCAATGAAAGAGGGAAGTGCTGCCGCCATATCAATGCATTTGTTGCAGTTTCTGTTGCTCACCTTGCAAATGCAACAGGTGAATTGGGAGTTTCTTCCGACTTATCTGACATTTGCTTGCAATTTATACTTCAAACCATGGGACTGCATGGAGTTCCTAGAAATGCCATGGTTTTCTGTGGGGTTGGAACCAAAATTCCAGTGAACTATGCGTGTAGAGGTCGAGAAACTGTCACACAGATGCTGGAATCTCCAAAATTTACAAATGTCAGTGAAAATTGCAAGTTGCCAATATCAGAGGAGAGTACTTGTAGGAAGTGTATTAATTCTGGGATTTTATATCTCCACAATCTGATCGGAAGAGAAGATAATATAACGTTAAATACTTGTCGTGACGCTACGTTTGTTGCACTTGCTAGCCAACTTGATCCTGCTTCAGTTATTGATCTAGCAACCTGCTTCTTTGGAGTTCAAGGCTTTAACAAGCCTCCAGCTCCACCCCCATCTTCGACCACACCAGAAATTTCCCCAAGTCCATCAGCTGCTGAAAGCCCGGGATCACTGACGCTTGATGTTGCTGGTGATAAAAGTCACCAACATCATTCCTACCATCTGACATTAGTGGCGGGTATTGGCATCGCGGTGACTGTCGCTTCTGTAATGATGCTGGTTGTCTTGATTGTGTTGATTCGAAGGAAAAGCCGAGAGCTAAAGGATTCTGATAAGATGGATGCCAACTCTTCAAAATCTTTCCCCTCTCGTCCCATGAAAAAGTATCAGGAAGGTTGGCCTTGGGAACATTCATGTCCGAGTCATCTTTCAGTTGTCTCTTTCTTTTGTGTCTTATGCCCTCTGTTGTCTCCGGCATCTCATGCAGGACCTTCTATGTTTAAAAAGTTCAGCTATAAGGAGATCAAGAAGGCAACAGATAGTTTTAGTACAACAATTGGTCAAGGAGGATATGGAACTGTTTATAAAGCTCAGTTCACCGATGACGTAGTAGTAGCTGTGAAGAGGATGAACAAAGTCTCCGAGCAGGGTGAAGATGAATTTGGCCGAGAAATTGAGCTGCTTGCAAGATTACATCATCGACATCTTGTTGCCTTAAGGGGCTTTTGTGTTGAAAAGCATGAACGGTTCCTTTTGTACGAGTTTATGGCTAATGGAAGCTTGAAGGACCATCTTCATGACGATCTTTCAACAAAATTTGGTTTAGAACCTACTGTTACTCATAAGCTCCTTGGGGCCTGGTCGCATCCTTTTAGAATGAAAAGAAAATTCCTGATGAAATTTCATTTGAACCATTTTTTCTTGGATACGGTTGGAATCAAACGGAAGAATCTAAAAGTATTTAGAAACCCTTTCAAGTGTGTAGCTCCTGGCAGGACCCCTCTAAGTTGGCGGACAAGAATCCAAATTGCCATTGACGTTGCCAATGCTCTGGAGTATCTTCACTATTATTGTGATCCTCCACTGTGCCACAGAGACATCAAGTCCAGCAACATTTTACTGGATGAGAACTTTGTAGCTAAGGTTGCCGATTTTGGCCTTGCACATGCTTCAAAGGGCGGTTCTGTTTTTTTCGAACCTGTAAATACGGATATCCGAGGAACGCCAGGTTATATGGATCCTGAGTATGTCATCACACAAGAACTTACTGAGAAAAGTGATATATACAGCTATGGTGTACTACTTCTGGAAATAGTTACTGGCAGACGTGCGATACAAGACGGGAAGAATCTGGTTGAATGGTCCCTAGGGTACATGATTTCAGATTCAAGGATATCTGAATTAGTAGATCCAAGTATCAAGGGCTGTTTTAACTTGGACCAACTTCACACGGTCGTGTCAATTGTGAGATGGTGCACCGAGGGAGAAGGCAGGGCAAGGCCTTCAATTAAGCAGGTGCTTCGACTATTATACGAGAGTTCGGATCCAATGCATCAAGGGCTCATGGAGGCTGTGGATGATGAAGAATGTGAAGGGATTGAAGGGAGACAGAGCATGAGCAAGAGAAAAATGCATAAAAGTGATGTGATTTTCCATAGTGGAGATGGAAGGTATCTTGCTTCTTCATCAAGCACATCTAGGTCATATTGTAGTAGAAGCTTTTTACTTGAAACTGGTTCACCACAGTCTCCTCCCAATATTTATTCTGCCTCAGACCAATTATTTTAG 2322 42.89 MAATALSRALFLMGFLLFLQLQLPETMADCPLDLSGSNFTLVASICSNPNERGKCCRHINAFVAVSVAHLANATGELGVSSDLSDICLQFILQTMGLHGVPRNAMVFCGVGTKIPVNYACRGRETVTQMLESPKFTNVSENCKLPISEESTCRKCINSGILYLHNLIGREDNITLNTCRDATFVALASQLDPASVIDLATCFFGVQGFNKPPAPPPSSTTPEISPSPSAAESPGSLTLDVAGDKSHQHHSYHLTLVAGIGIAVTVASVMMLVVLIVLIRRKSRELKDSDKMDANSSKSFPSRPMKKYQEGWPWEHSCPSHLSVVSFFCVLCPLLSPASHAGPSMFKKFSYKEIKKATDSFSTTIGQGGYGTVYKAQFTDDVVVAVKRMNKVSEQGEDEFGREIELLARLHHRHLVALRGFCVEKHERFLLYEFMANGSLKDHLHDDLSTKFGLEPTVTHKLLGAWSHPFRMKRKFLMKFHLNHFFLDTVGIKRKNLKVFRNPFKCVAPGRTPLSWRTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKGGSVFFEPVNTDIRGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDGKNLVEWSLGYMISDSRISELVDPSIKGCFNLDQLHTVVSIVRWCTEGEGRARPSIKQVLRLLYESSDPMHQGLMEAVDDEECEGIEGRQSMSKRKMHKSDVIFHSGDGRYLASSSSTSRSYCSRSFLLETGSPQSPPNIYSASDQLF 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11283147 11288101 - MELO3C019517.2.1 Cme06g01335 330484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01335 773 Pfam SPARK 28 160 IPR043891 -
Cme06g01335 773 Pfam Protein tyrosine and serine/threonine kinase 360 687 IPR001245 GO:0004672|GO:0006468
Cme06g01335 773 Gene3D Transferase(Phosphotransferase) domain 1 503 709 - -
Cme06g01335 773 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
Cme06g01335 773 ProSiteProfiles Protein kinase domain profile. 358 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01335 773 MobiDBLite consensus disorder prediction 212 239 - -
Cme06g01335 773 SMART serkin_6 358 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01335 773 PANTHER BNAC06G02630D PROTEIN 8 311 - -
Cme06g01335 773 PANTHER BNAC06G02630D PROTEIN 507 767 - -
Cme06g01335 773 PANTHER BNAC06G02630D PROTEIN 340 446 - -
Cme06g01335 773 SUPERFAMILY Protein kinase-like (PK-like) 342 689 IPR011009 -
Cme06g01335 773 Gene3D Phosphorylase Kinase; domain 1 336 433 - -
Cme06g01335 773 PANTHER OS01G0750732 PROTEIN 340 446 - -
Cme06g01335 773 PANTHER OS01G0750732 PROTEIN 8 311 - -
Cme06g01335 773 PANTHER OS01G0750732 PROTEIN 507 767 - -
Cme06g01335 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01335 Cme-Chr6:11283147 Cme04g00927 Cme-Chr4:12444515 4.79E-60 dispersed
Cme06g01335 Cme-Chr6:11283147 Cme01g02844 Cme-Chr1:35340014 2.89E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64960 PF07714 PK_Tyr_Ser-Thr 7.40E-43 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01335 - - cmo:103496163 1231.47