Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01339 ATGCCTGGGACTGGGAGTGTTGCTGTTCAACCTTTGGATTTGAGCCTACACATTCCATACCATTTCAGATGCCCCATTTCTCTTGAGCTCATGCGTGATCCTGTTACCGTCAGCACCGGTCAGACTTACGACCGTTCAAGTATCGAGTCATGGGTTGCCACCGGAAACACTACCTGTCCGGTTACTAGGGCTCCACTCACCGACTTCACCCTCATCCCTAACCATACTCTGCGTCGGCTAATCCAGGACTGGTGTGTTGCCAATCGGTCTTATGGTGTTGAGCGGATTCCCACTCCCAAGCAGCCGGCGGAACCTTCTTTGGTTAGGTCTTTGCTTGGTCAAGCTTCGTCGAGATCGAGTGGTTCGAGTTTGAGAATCTCGGCTTTGCGTCGGTTGAAAGGACTCGCTCGTGACTCGGATAAGAATCGGTCTCTGATTTCATCGCTTAATGCTCGTGAAATTCTTCTCGATGTTGTGTTTTCCAATTTGGATTCGGGTTCGGATTCGTTTTCACCTGATTTGAGCCGTGAATCGCTTGCGCTTCTTGTGATGTTACCGCTCACGGAATCTGAGTGTGTTCTTGTTGCGTCTGATCCACAACGGATTGGTTACCTTTCACATCTTCTGTTTGATTCTTCCATTGAAGTCCGAATCAATGCTGCCGCGTTGATTGAGACCGTAATTGCCGGAACTCGAGCGTCGGAGCTTCGAACCCAAATTTGTGGAATCGATGAATTGTTTGAAGGCGTGGTTGAAATTCTTAGAGATCCAACGGCGTATCCACGAGCACTCAAGGTCGGAGTTAAGGCTTTATTTGCTCTCTGTTTGGTGAAACAAACGAGGCATAAGGCAGTTTCCGCCGGCGCCGCTGAGATTATCATCGACCGATTTCCCGATTTGGAGAAGTACGATGCTGAGCGAGCCCTAGCTACGATTGAACTAATTTGCAGAGTTCCGACCGGTTGCGATGCGTTTGCAGCTCACGCGCTCACCGTTCCGCTTTTGGTGAAAGTCATTTTGAAGATCTCGGACAGAGCGACGGAGTCGGCTGTCGGAGCTTTGGTGTCGCTGTGTTCGGCGTCGGAGGAGAATCGGAGGGAGGCGGTGGCGGCGGGGATATTGACACAGTTGTTGTTGTTGGTGCAAAGCGATTGTACGGAGAGAGTTAAACGGAAATCGCAGGTGTTGCTGAAGCTTCTTCGAGATTCATGGCCGCAAGAGTCGGTTGGAAATTCGGACGATTATGGTTGCAGTGAAATTGTGGTACCATTTTGTTAA 1278 50.08 MPGTGSVAVQPLDLSLHIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRSYGVERIPTPKQPAEPSLVRSLLGQASSRSSGSSLRISALRRLKGLARDSDKNRSLISSLNAREILLDVVFSNLDSGSDSFSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIETVIAGTRASELRTQICGIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEIIIDRFPDLEKYDAERALATIELICRVPTGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGILTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQESVGNSDDYGCSEIVVPFC 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11432445 11434592 + MELO3C019521.2.1 Cme06g01339 330488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01339 425 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 421 - -
Cme06g01339 425 PANTHER WDSAM1 PROTEIN 9 421 IPR045185 GO:0061630
Cme06g01339 425 SUPERFAMILY ARM repeat 107 400 IPR016024 -
Cme06g01339 425 CDD RING-Ubox_PUB 22 63 IPR045210 -
Cme06g01339 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 91 IPR013083 -
Cme06g01339 425 Pfam U-box domain 18 89 IPR003613 GO:0004842|GO:0016567
Cme06g01339 425 SMART Ubox_2 21 84 IPR003613 GO:0004842|GO:0016567
Cme06g01339 425 Gene3D - 94 301 IPR011989 -
Cme06g01339 425 ProSiteProfiles U-box domain profile. 17 91 IPR003613 GO:0004842|GO:0016567
Cme06g01339 425 SUPERFAMILY RING/U-box 16 93 - -
Cme06g01339 425 Gene3D - 302 401 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02117 Cme-Chr3:28401413 Cme06g01339 Cme-Chr6:11432445 2.62E-41 dispersed
Cme04g00172 Cme-Chr4:1298071 Cme06g01339 Cme-Chr6:11432445 2.37E-20 dispersed
Cme06g01339 Cme-Chr6:11432445 Cme07g00440 Cme-Chr7:2979812 9.76E-69 dispersed
Cme06g01339 Cme-Chr6:11432445 Cme04g02322 Cme-Chr4:30163072 1.57E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01339 - - csv:101219319 790.801