Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01347 ATGGCGGCTCAGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGCGGTGCCAATTTTGTCACTACTTCTTTGTACGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGACATTTTCAATCAGGTGGGCCAGGTAGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGCTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTTTGAACGGTAAACCTATTAGAGTGATGTATTCTCACCGTGACCCAAGCATTCGCAAGAGTGGGGCTGGAAATATATTCATCAAGAATTTAGACAAGGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGCTCAGAAAGCTATTGAGAAGCTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCTTTTCTTCGTAAACAAGAAAGAGATGGTGTTGTTGACAAATCCAAATTTAACAATGTATTTGTAAAAAATCTTTCTGAGACTACTACTGAAGAGGATTTGAACAAAGCTTTTTCTGAATTTGGGACACTCACGAGTATTGTTGTGATGAGGGATGCTGATGGTAAATCAAGATGCTTTGGATTTGTTAATTTTGAAAATGCCGATGACGCTGCTAGGGCAGTTGATGCCCTTAACGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGAAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAAGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTCCATTTGGCACAATCACCTCATGCAAGGTCATGCGCGACCCCAATGGCATAAGCAGAGGTTCCGGATTTGTTGCATTCTCAACCCCTGATGAGGCATCTAGAGCTCTTGTGGAGATGAATGGCAAAATGGTTGTTAGCAAACCATTGTATGTAGCACTTGCACAGAGGAAGGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATACGGCCAGTTGCCATGCCTGCTTCAGTTGCCCCTCGGATGCCAATATATCCCCCTGGTGGACCAGGTATTGGACAGCAGTTGTTTTATGGTCAAGCTCCTCCTGCAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGACCAATGCCAAATTTTTTTGTCCCAATGGTTCAGCAAGGTCAGCAAGGCCAGCGCCCTGGGGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGGTATCCCCCTGGAAGAGGTTTGCCTGATGTTGCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGATATGGGAGGTATGCCATTGCGAGATGCGGCACACTCTCAACCTATCCCTATTGGTGCACTGGCTTCTGCTCTGGCAAATGCTACTCCCGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTTGTGGAACAGTTAGAGCCTGACAACGCGGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTAGAGTCCCCAGAAGCTTTGAAGGCGAAAGTAGCGGAAGCTATGGAGGTTTTGAGGAATGTTGCGGCAGCTCAGCAGCAGCAGCAAGCTGGCAATGCAGCAGATCAGCTAGCTTCTCTGTCGCTGACGGAGAACCTTGTGTCGTGA 1965 46.56 MAAQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMPASVAPRMPIYPPGGPGIGQQLFYGQAPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVAMPGVAGGMFSVPYDMGGMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQQAGNAADQLASLSLTENLVS 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11512384 11518129 - MELO3C019525.2.1 Cme06g01347 330496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01347 654 Gene3D - 118 190 IPR012677 -
Cme06g01347 654 SUPERFAMILY PABC (PABP) domain 495 638 IPR036053 GO:0003723
Cme06g01347 654 MobiDBLite consensus disorder prediction 473 494 - -
Cme06g01347 654 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Cme06g01347 654 PANTHER POLYADENYLATE-BINDING PROTEIN 18 634 - -
Cme06g01347 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Cme06g01347 654 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Cme06g01347 654 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Cme06g01347 654 CDD RRM4_I_PABPs 310 388 - -
Cme06g01347 654 PANTHER RNA BINDING PROTEIN 18 634 - -
Cme06g01347 654 CDD RRM2_I_PABPs 115 191 IPR045305 -
Cme06g01347 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Cme06g01347 654 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Cme06g01347 654 CDD RRM1_I_PABPs 30 109 - -
Cme06g01347 654 SMART rrm2_1 30 103 IPR003954 GO:0003676
Cme06g01347 654 SMART rrm2_1 312 384 IPR003954 GO:0003676
Cme06g01347 654 SMART rrm2_1 118 190 IPR003954 GO:0003676
Cme06g01347 654 SMART rrm2_1 209 281 IPR003954 GO:0003676
Cme06g01347 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Cme06g01347 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Cme06g01347 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Cme06g01347 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Cme06g01347 654 SMART rrm1_1 118 190 IPR000504 GO:0003723
Cme06g01347 654 SMART rrm1_1 209 281 IPR000504 GO:0003723
Cme06g01347 654 SMART rrm1_1 30 103 IPR000504 GO:0003723
Cme06g01347 654 SMART rrm1_1 312 384 IPR000504 GO:0003723
Cme06g01347 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Cme06g01347 654 Gene3D - 192 293 IPR012677 -
Cme06g01347 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Cme06g01347 654 Gene3D - 294 396 IPR012677 -
Cme06g01347 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Cme06g01347 654 SMART poly_2 564 627 IPR002004 GO:0003723
Cme06g01347 654 Gene3D - 548 632 - -
Cme06g01347 654 Gene3D - 1 117 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01068 Cme-Chr3:20043267 Cme06g01347 Cme-Chr6:11512384 0 dispersed
Cme04g02457 Cme-Chr4:31131751 Cme06g01347 Cme-Chr6:11512384 1.14E-18 dispersed
Cme06g01347 Cme-Chr6:11512384 Cme12g01481 Cme-Chr12:22464069 2.08E-07 dispersed
Cme01g01244 Cme-Chr1:15820630 Cme06g01347 Cme-Chr6:11512384 5.69E-06 transposed
Cme08g01041 Cme-Chr8:6745836 Cme06g01347 Cme-Chr6:11512384 6.37E-13 transposed
Cme09g01931 Cme-Chr9:23373853 Cme06g01347 Cme-Chr6:11512384 2.48E-09 transposed
Cme06g00868 Cme-Chr6:5944959 Cme06g01347 Cme-Chr6:11512384 7.23E-07 transposed
Cme01g00061 Cme-Chr1:465786 Cme06g01347 Cme-Chr6:11512384 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01347 K13126 - csv:101219802 1218.37