Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01347 ATGGCGGCTCAGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGCGGTGCCAATTTTGTCACTACTTCTTTGTACGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGACATTTTCAATCAGGTGGGCCAGGTAGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGCTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTTTGAACGGTAAACCTATTAGAGTGATGTATTCTCACCGTGACCCAAGCATTCGCAAGAGTGGGGCTGGAAATATATTCATCAAGAATTTAGACAAGGCAATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGCTCAGAAAGCTATTGAGAAGCTGAACGGTATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCTTTTCTTCGTAAACAAGAAAGAGATGGTGTTGTTGACAAATCCAAATTTAACAATGTATTTGTAAAAAATCTTTCTGAGACTACTACTGAAGAGGATTTGAACAAAGCTTTTTCTGAATTTGGGACACTCACGAGTATTGTTGTGATGAGGGATGCTGATGGTAAATCAAGATGCTTTGGATTTGTTAATTTTGAAAATGCCGATGACGCTGCTAGGGCAGTTGATGCCCTTAACGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGAAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAAGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTCCATTTGGCACAATCACCTCATGCAAGGTCATGCGCGACCCCAATGGCATAAGCAGAGGTTCCGGATTTGTTGCATTCTCAACCCCTGATGAGGCATCTAGAGCTCTTGTGGAGATGAATGGCAAAATGGTTGTTAGCAAACCATTGTATGTAGCACTTGCACAGAGGAAGGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATACGGCCAGTTGCCATGCCTGCTTCAGTTGCCCCTCGGATGCCAATATATCCCCCTGGTGGACCAGGTATTGGACAGCAGTTGTTTTATGGTCAAGCTCCTCCTGCAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGACCAATGCCAAATTTTTTTGTCCCAATGGTTCAGCAAGGTCAGCAAGGCCAGCGCCCTGGGGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGGTATCCCCCTGGAAGAGGTTTGCCTGATGTTGCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGATATGGGAGGTATGCCATTGCGAGATGCGGCACACTCTCAACCTATCCCTATTGGTGCACTGGCTTCTGCTCTGGCAAATGCTACTCCCGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTTGTGGAACAGTTAGAGCCTGACAACGCGGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTAGAGTCCCCAGAAGCTTTGAAGGCGAAAGTAGCGGAAGCTATGGAGGTTTTGAGGAATGTTGCGGCAGCTCAGCAGCAGCAGCAAGCTGGCAATGCAGCAGATCAGCTAGCTTCTCTGTCGCTGACGGAGAACCTTGTGTCGTGA 1965 46.56 MAAQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMPASVAPRMPIYPPGGPGIGQQLFYGQAPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVAMPGVAGGMFSVPYDMGGMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQQAGNAADQLASLSLTENLVS 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11512384 11518129 - MELO3C019525.2.1 Cme06g01347 330496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01347 654 Gene3D - 118 190 IPR012677 -
Cme06g01347 654 SUPERFAMILY PABC (PABP) domain 495 638 IPR036053 GO:0003723
Cme06g01347 654 MobiDBLite consensus disorder prediction 473 494 - -
Cme06g01347 654 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Cme06g01347 654 PANTHER POLYADENYLATE-BINDING PROTEIN 18 634 - -
Cme06g01347 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Cme06g01347 654 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Cme06g01347 654 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Cme06g01347 654 CDD RRM4_I_PABPs 310 388 - -
Cme06g01347 654 PANTHER RNA BINDING PROTEIN 18 634 - -
Cme06g01347 654 CDD RRM2_I_PABPs 115 191 IPR045305 -
Cme06g01347 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Cme06g01347 654 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Cme06g01347 654 CDD RRM1_I_PABPs 30 109 - -
Cme06g01347 654 SMART rrm2_1 30 103 IPR003954 GO:0003676
Cme06g01347 654 SMART rrm2_1 312 384 IPR003954 GO:0003676
Cme06g01347 654 SMART rrm2_1 118 190 IPR003954 GO:0003676
Cme06g01347 654 SMART rrm2_1 209 281 IPR003954 GO:0003676
Cme06g01347 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Cme06g01347 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Cme06g01347 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Cme06g01347 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Cme06g01347 654 SMART rrm1_1 118 190 IPR000504 GO:0003723
Cme06g01347 654 SMART rrm1_1 209 281 IPR000504 GO:0003723
Cme06g01347 654 SMART rrm1_1 30 103 IPR000504 GO:0003723
Cme06g01347 654 SMART rrm1_1 312 384 IPR000504 GO:0003723
Cme06g01347 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Cme06g01347 654 Gene3D - 192 293 IPR012677 -
Cme06g01347 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Cme06g01347 654 Gene3D - 294 396 IPR012677 -
Cme06g01347 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Cme06g01347 654 SMART poly_2 564 627 IPR002004 GO:0003723
Cme06g01347 654 Gene3D - 548 632 - -
Cme06g01347 654 Gene3D - 1 117 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01347 K13126 PABPC; polyadenylate-binding protein - csv:101219802 1218.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01068 Cme-Chr3:20043267 Cme06g01347 Cme-Chr6:11512384 0 dispersed
Cme04g02457 Cme-Chr4:31131751 Cme06g01347 Cme-Chr6:11512384 1.14E-18 dispersed
Cme06g01347 Cme-Chr6:11512384 Cme12g01481 Cme-Chr12:22464069 2.08E-07 dispersed
Cme01g01244 Cme-Chr1:15820630 Cme06g01347 Cme-Chr6:11512384 5.69E-06 transposed
Cme08g01041 Cme-Chr8:6745836 Cme06g01347 Cme-Chr6:11512384 6.37E-13 transposed
Cme09g01931 Cme-Chr9:23373853 Cme06g01347 Cme-Chr6:11512384 2.48E-09 transposed
Cme06g00868 Cme-Chr6:5944959 Cme06g01347 Cme-Chr6:11512384 7.23E-07 transposed
Cme01g00061 Cme-Chr1:465786 Cme06g01347 Cme-Chr6:11512384 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g00722 . 1 464 Eukaryotic Initiation Factors Gene Family AT5G60390 92.7 2.9e-250 860.9
Cme11g01780 . 1 459 Eukaryotic Initiation Factors Gene Family AT5G60390 92.8 6.4e-250 859.8
Cme09g00630 . 1 411 Eukaryotic Initiation Factors Gene Family AT5G60390 87.1 2.7e-224 774.6
Cme09g00618 . 1 273 Eukaryotic Initiation Factors Gene Family AT5G60390 57.2 8.4e-125 444.1
Cme05g00722 . 1 464 Eukaryotic Initiation Factors Gene Family AT1G07920 92.7 2.9e-250 860.9
Cme11g01780 . 1 459 Eukaryotic Initiation Factors Gene Family AT1G07920 92.8 6.4e-250 859.8
Cme09g00630 . 1 411 Eukaryotic Initiation Factors Gene Family AT1G07920 87.1 2.7e-224 774.6
Cme09g00618 . 1 273 Eukaryotic Initiation Factors Gene Family AT1G07920 57.2 8.4e-125 444.1
Cme11g01780 . 1 459 Eukaryotic Initiation Factors Gene Family AT1G07930 78.0 5.6e-199 690.3
Cme05g00722 . 1 464 Eukaryotic Initiation Factors Gene Family AT1G07930 77.4 3.6e-198 687.6
Cme09g00630 . 1 411 Eukaryotic Initiation Factors Gene Family AT1G07930 83.5 1.4e-194 675.6
Cme09g00618 . 1 273 Eukaryotic Initiation Factors Gene Family AT1G07930 59.9 2.4e-109 392.5
Cme05g00722 . 1 464 Eukaryotic Initiation Factors Gene Family AT1G07940 92.7 2.9e-250 860.9
Cme11g01780 . 1 459 Eukaryotic Initiation Factors Gene Family AT1G07940 92.8 6.4e-250 859.8
Cme09g00630 . 1 411 Eukaryotic Initiation Factors Gene Family AT1G07940 87.1 2.7e-224 774.6
Cme09g00618 . 1 273 Eukaryotic Initiation Factors Gene Family AT1G07940 57.2 8.4e-125 444.1
Cme05g01747 . 1 724 Eukaryotic Initiation Factors Gene Family AT3G02270 55.0 9.9e-178 620.5
Cme01g00414 . 1 113 Eukaryotic Initiation Factors Gene Family AT4G27130 88.5 2.6e-54 208.0
Cme01g01033 . 34 145 Eukaryotic Initiation Factors Gene Family AT4G27130 81.4 2.3e-47 184.9
Cme06g02249 . 1 112 Eukaryotic Initiation Factors Gene Family AT4G27130 80.5 5.2e-47 183.7
Cme01g00414 . 1 113 Eukaryotic Initiation Factors Gene Family AT5G54760 87.6 5.7e-54 206.8
Cme01g01033 . 34 145 Eukaryotic Initiation Factors Gene Family AT5G54760 81.4 2.3e-47 184.9
Cme06g02249 . 1 112 Eukaryotic Initiation Factors Gene Family AT5G54760 80.5 5.2e-47 183.7
Cme06g02249 . 1 112 Eukaryotic Initiation Factors Gene Family AT5G54940 85.7 6.3e-53 203.4
Cme01g01033 . 34 145 Eukaryotic Initiation Factors Gene Family AT5G54940 85.7 1.8e-52 201.8
Cme01g00414 . 1 113 Eukaryotic Initiation Factors Gene Family AT5G54940 73.5 2.0e-43 171.8
Cme01g00414 . 1 113 Eukaryotic Initiation Factors Gene Family AT1G54290 88.5 6.8e-55 209.9
Cme06g02249 . 1 112 Eukaryotic Initiation Factors Gene Family AT1G54290 81.4 4.7e-48 187.2
Cme01g01033 . 34 145 Eukaryotic Initiation Factors Gene Family AT1G54290 79.6 5.2e-47 183.7
Cme01g00489 . 1 128 Eukaryotic Initiation Factors Gene Family AT5G35680 93.8 5.1e-66 247.3
Cme11g00413 . 1 128 Eukaryotic Initiation Factors Gene Family AT5G35680 92.2 5.6e-65 243.8
Cme01g00489 . 1 145 Eukaryotic Initiation Factors Gene Family AT2G04520 89.0 4.3e-70 260.8
Cme11g00413 . 1 145 Eukaryotic Initiation Factors Gene Family AT2G04520 88.3 9.6e-70 259.6
Cme01g01581 . 1 225 Eukaryotic Initiation Factors Gene Family AT2G40290 88.9 2.9e-116 414.8
Cme01g01581 . 1 344 Eukaryotic Initiation Factors Gene Family AT5G05470 80.9 3.8e-157 551.2
Cme12g00547 . 1 268 Eukaryotic Initiation Factors Gene Family AT5G20920 75.9 2.7e-110 395.2
Cme12g00547 . 115 255 Eukaryotic Initiation Factors Gene Family AT5G01940 56.3 1.5e-38 156.8
Cme12g00547 . 119 262 Eukaryotic Initiation Factors Gene Family AT3G07920 70.9 5.2e-56 214.2
Cme10g01356 . 1 464 Eukaryotic Initiation Factors Gene Family AT1G04170 91.2 5.8e-246 846.7
Cme10g01356 . 4 464 Eukaryotic Initiation Factors Gene Family AT4G18330 82.6 8.1e-219 756.5
Cme10g01356 . 93 463 Eukaryotic Initiation Factors Gene Family AT2G18720 75.5 6.6e-163 570.5
Cme01g02763 . 1 394 Eukaryotic Initiation Factors Gene Family AT1G53880 78.9 2.1e-169 592.0
Cme01g02763 . 1 326 Eukaryotic Initiation Factors Gene Family AT1G72340 76.7 9.3e-134 473.4
Cme02g00312 . 56 378 Eukaryotic Initiation Factors Gene Family AT2G05830 74.0 2.1e-133 472.2
Cme09g01157 . 1 409 Eukaryotic Initiation Factors Gene Family AT3G07300 82.7 8.9e-182 633.3
Cme02g01773 . 1 647 Eukaryotic Initiation Factors Gene Family AT5G38640 60.5 7.4e-199 690.6
Cme02g01772 . 1 652 Eukaryotic Initiation Factors Gene Family AT5G38640 60.4 2.4e-197 685.6
Cme02g01772 . 329 652 Eukaryotic Initiation Factors Gene Family AT2G44070 76.0 3.7e-141 498.0
Cme02g01773 . 324 647 Eukaryotic Initiation Factors Gene Family AT2G44070 75.4 8.1e-141 496.9
Cme02g01773 . 1 579 Eukaryotic Initiation Factors Gene Family AT1G48970 57.5 3.5e-169 592.0
Cme02g01772 . 1 584 Eukaryotic Initiation Factors Gene Family AT1G48970 56.4 2.6e-164 575.9
Cme05g01747 . 1 724 Eukaryotic Initiation Factors Gene Family AT2G34970 64.0 3.3e-235 811.6
Cme05g01747 . 1 724 Eukaryotic Initiation Factors Gene Family AT3G02270 55.0 9.9e-178 620.5
Cme05g01747 . 1 724 Eukaryotic Initiation Factors Gene Family AT4G18300 59.9 8.4e-204 707.2
Cme12g02023 . 120 1059 Eukaryotic Initiation Factors Gene Family AT1G48410 83.6 0.0e+00 1567.4
Cme06g00567 . 119 984 Eukaryotic Initiation Factors Gene Family AT1G48410 77.5 0.0e+00 1379.4
Cme12g00518 . 190 1042 Eukaryotic Initiation Factors Gene Family AT1G48410 59.4 4.2e-300 1027.7
Cme02g01280 . 63 590 Eukaryotic Initiation Factors Gene Family AT1G48410 63.5 1.2e-190 664.1
Cme06g00567 . 1 984 Eukaryotic Initiation Factors Gene Family AT5G43810 82.9 0.0e+00 1668.3
Cme12g02023 . 184 1059 Eukaryotic Initiation Factors Gene Family AT5G43810 76.5 0.0e+00 1374.8
Cme12g00518 . 152 1042 Eukaryotic Initiation Factors Gene Family AT5G43810 55.3 1.2e-285 979.5
Cme02g01280 . 69 582 Eukaryotic Initiation Factors Gene Family AT5G43810 67.4 2.7e-208 722.6
Cme12g01088 . 1 962 Eukaryotic Initiation Factors Gene Family AT4G11420 68.5 0.0e+00 1121.3
Cme12g01081 . 1 960 Eukaryotic Initiation Factors Gene Family AT4G11420 66.9 0.0e+00 1086.6
Cme12g01085 . 1 646 Eukaryotic Initiation Factors Gene Family AT4G11420 73.1 4.2e-262 901.4
Cme01g01128 . 1 569 Eukaryotic Initiation Factors Gene Family AT5G27640 76.5 2.2e-268 921.8
Cme01g01129 . 1 415 Eukaryotic Initiation Factors Gene Family AT5G27640 77.6 6.3e-191 664.5
Cme01g01128 . 1 569 Eukaryotic Initiation Factors Gene Family AT5G25780 75.3 6.0e-266 913.7
Cme01g01129 . 1 415 Eukaryotic Initiation Factors Gene Family AT5G25780 76.7 7.0e-190 661.0
Cme06g01217 . 1 939 Eukaryotic Initiation Factors Gene Family AT3G56150 68.4 0.0e+00 1150.2
Cme06g01217 . 3 844 Eukaryotic Initiation Factors Gene Family AT3G22860 58.7 2.8e-256 881.7
Cme08g02240 . 3 437 Eukaryotic Initiation Factors Gene Family AT3G57290 87.1 1.4e-228 788.9
Cme03g00235 . 2 285 Eukaryotic Initiation Factors Gene Family AT2G39990 76.6 7.0e-128 453.8
Cme06g01657 . 4 288 Eukaryotic Initiation Factors Gene Family AT3G11400 69.4 4.2e-118 421.4
Cme12g02033 . 8 289 Eukaryotic Initiation Factors Gene Family AT3G11400 69.1 3.3e-115 411.8
Cme06g01657 . 2 286 Eukaryotic Initiation Factors Gene Family AT5G06000 67.4 6.4e-108 387.5
Cme12g02033 . 9 287 Eukaryotic Initiation Factors Gene Family AT5G06000 68.7 4.2e-107 384.8
Cme07g01879 . 1 215 Eukaryotic Initiation Factors Gene Family AT1G10840 80.9 2.0e-99 359.0
Cme04g02012 . 1 247 Eukaryotic Initiation Factors Gene Family AT2G46280 67.1 2.8e-93 338.6
Cme04g02012 . 1 326 Eukaryotic Initiation Factors Gene Family AT2G46290 81.7 1.3e-160 562.8
Cme02g00337 . 1 214 Eukaryotic Initiation Factors Gene Family AT4G33250 70.1 1.0e-86 316.6
Cme01g02831 . 404 794 Eukaryotic Initiation Factors Gene Family AT3G13920 93.1 6.7e-209 723.4
Cme04g01226 . 1 391 Eukaryotic Initiation Factors Gene Family AT3G13920 92.6 4.4e-208 720.7
Cme04g01583 . 37 387 Eukaryotic Initiation Factors Gene Family AT3G13920 67.5 6.4e-135 477.6
Cme04g01226 . 1 413 Eukaryotic Initiation Factors Gene Family AT1G72730 89.1 2.8e-215 744.6
Cme01g02831 . 404 816 Eukaryotic Initiation Factors Gene Family AT1G72730 89.4 4.7e-215 743.8
Cme04g01583 . 37 409 Eukaryotic Initiation Factors Gene Family AT1G72730 64.9 8.6e-140 493.8
Cme04g01583 . 21 409 Eukaryotic Initiation Factors Gene Family AT3G19760 88.7 1.1e-200 696.0
Cme01g02831 . 440 816 Eukaryotic Initiation Factors Gene Family AT3G19760 63.7 9.3e-139 490.3
Cme04g01226 . 37 413 Eukaryotic Initiation Factors Gene Family AT3G19760 63.7 1.6e-138 489.6
Cme03g01618 . 1 427 Eukaryotic Initiation Factors Gene Family AT5G11200 85.9 2.3e-226 781.6
Cme03g01618 . 84 427 Eukaryotic Initiation Factors Gene Family AT5G11170 95.1 1.3e-189 659.1
Cme03g02216 . 1 563 Eukaryotic Initiation Factors Gene Family AT3G26400 50.1 8.0e-98 354.8
Cme11g00411 CCT 41 428 Eukaryotic Initiation Factors Gene Family AT4G38710 54.9 7.8e-73 271.6
Cme12g01244 . 1 233 Eukaryotic Initiation Factors Gene Family AT4G18040 68.8 2.9e-92 335.1
Cme05g00608 . 25 202 Eukaryotic Initiation Factors Gene Family AT4G18040 54.7 1.2e-58 223.4
Cme12g01244 . 48 235 Eukaryotic Initiation Factors Gene Family AT1G29590 63.3 4.7e-74 274.6
Cme05g00608 . 27 203 Eukaryotic Initiation Factors Gene Family AT1G29590 52.8 3.8e-55 211.8
Cme12g01244 . 48 235 Eukaryotic Initiation Factors Gene Family AT1G29550 63.8 2.8e-74 275.4
Cme05g00608 . 27 203 Eukaryotic Initiation Factors Gene Family AT1G29550 52.2 2.4e-54 209.1
Cme05g00608 . 14 195 Eukaryotic Initiation Factors Gene Family AT5G35620 67.7 1.5e-70 262.7
Cme12g01244 . 58 224 Eukaryotic Initiation Factors Gene Family AT5G35620 55.8 3.6e-51 198.4
Cme04g01805 . 48 238 Eukaryotic Initiation Factors Gene Family AT5G18110 85.3 2.2e-97 352.1
Cme05g00800 . 82 290 Eukaryotic Initiation Factors Gene Family AT3G60240 54.5 1.6e-59 229.2
Cme02g01042 CCT 1 798 Eukaryotic Initiation Factors Gene Family AT5G57870 63.5 5.3e-268 920.6
Cme07g00133 . 2 766 Eukaryotic Initiation Factors Gene Family AT5G57870 57.3 2.6e-238 822.0
Cme02g01042 CCT 2 798 Eukaryotic Initiation Factors Gene Family AT2G24050 55.4 6.8e-228 787.3
Cme07g00133 . 2 767 Eukaryotic Initiation Factors Gene Family AT2G24050 56.1 1.8e-220 762.7
Cme02g01042 CCT 253 443 Eukaryotic Initiation Factors Gene Family AT1G62410 52.4 5.4e-48 188.0
Cme03g01501 . 1 444 Eukaryotic Initiation Factors Gene Family AT1G77840 61.6 3.0e-135 478.8
Cme03g01501 . 1 444 Eukaryotic Initiation Factors Gene Family AT1G36730 69.5 1.2e-123 440.3
Cme07g00120 CCT 1 127 Eukaryotic Initiation Factors Gene Family AT1G26630 84.3 2.1e-58 221.9
Cme02g01059 . 1 127 Eukaryotic Initiation Factors Gene Family AT1G26630 81.9 4.0e-57 217.6
Cme10g00380 . 1 108 Eukaryotic Initiation Factors Gene Family AT1G26630 70.1 2.9e-44 174.9
Cme03g01578 CCT 1 108 Eukaryotic Initiation Factors Gene Family AT1G26630 70.1 6.6e-44 173.7
Cme02g01059 . 1 159 Eukaryotic Initiation Factors Gene Family AT1G69410 84.3 2.8e-75 278.1
Cme07g00120 CCT 1 159 Eukaryotic Initiation Factors Gene Family AT1G69410 84.9 2.8e-75 278.1
Cme03g01578 CCT 1 140 Eukaryotic Initiation Factors Gene Family AT1G69410 76.1 1.9e-63 238.8
Cme10g00380 . 1 140 Eukaryotic Initiation Factors Gene Family AT1G69410 73.0 8.0e-62 233.4
Cme07g00120 CCT 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 89.9 8.0e-78 286.6
Cme02g01059 . 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 87.4 2.6e-76 281.6
Cme03g01578 CCT 1 140 Eukaryotic Initiation Factors Gene Family AT1G13950 78.6 7.2e-63 236.9
Cme10g00380 . 1 140 Eukaryotic Initiation Factors Gene Family AT1G13950 76.7 2.7e-62 235.0
Cme01g00671 . 335 1332 Eukaryotic Initiation Factors Gene Family AT1G76810 70.9 0.0e+00 1184.1
Cme01g00671 . 292 1332 Eukaryotic Initiation Factors Gene Family AT1G21160 54.5 1.8e-266 916.0
Cme02g00095 . 137 377 Eukaryotic Initiation Factors Gene Family AT3G55620 86.3 1.8e-121 432.2
Cme11g00028 . 1 161 Eukaryotic Initiation Factors Gene Family AT3G55620 84.5 8.0e-77 283.9
Cme02g00095 . 141 377 Eukaryotic Initiation Factors Gene Family AT2G39820 67.6 2.3e-92 335.5
Cme11g00028 . 1 161 Eukaryotic Initiation Factors Gene Family AT2G39820 66.9 6.4e-58 221.1
Cme06g01347 . 15 652 Eukaryotic Initiation Factors Gene Family AT2G23350 60.1 3.5e-204 708.4
Cme01g00061 . 5 662 Eukaryotic Initiation Factors Gene Family AT2G23350 57.0 3.1e-200 695.3
Cme03g01068 . 84 680 Eukaryotic Initiation Factors Gene Family AT2G23350 51.3 5.9e-151 531.6
Cme06g01347 . 18 649 Eukaryotic Initiation Factors Gene Family AT4G34110 72.2 1.2e-254 875.9
Cme01g00061 . 1 659 Eukaryotic Initiation Factors Gene Family AT4G34110 68.3 1.2e-246 849.4
Cme03g01068 . 69 698 Eukaryotic Initiation Factors Gene Family AT4G34110 56.6 7.8e-177 617.5
Cme03g01068 . 49 680 Eukaryotic Initiation Factors Gene Family AT1G22760 58.4 1.6e-193 672.9
Cme06g01347 . 29 625 Eukaryotic Initiation Factors Gene Family AT1G22760 55.1 7.7e-167 584.3
Cme01g00061 . 26 648 Eukaryotic Initiation Factors Gene Family AT1G22760 52.5 1.1e-162 570.5
Cme03g01068 . 82 698 Eukaryotic Initiation Factors Gene Family AT1G71770 57.2 1.2e-186 650.2
Cme06g01347 . 29 628 Eukaryotic Initiation Factors Gene Family AT1G71770 54.5 3.6e-167 585.5
Cme01g00061 . 26 640 Eukaryotic Initiation Factors Gene Family AT1G71770 53.4 1.7e-164 576.6
Cme06g01347 . 3 653 Eukaryotic Initiation Factors Gene Family AT1G49760 70.6 8.7e-259 889.8
Cme01g00061 . 25 662 Eukaryotic Initiation Factors Gene Family AT1G49760 70.6 3.7e-249 857.8
Cme03g01068 . 82 697 Eukaryotic Initiation Factors Gene Family AT1G49760 53.9 3.5e-167 585.5
Cme08g00757 . 111 299 Eukaryotic Initiation Factors Gene Family AT5G65250 50.5 3.4e-37 152.5
Cme05g00722 . 1 464 Eukaryotic Initiation Factors Gene Family AT1G07920 92.7 2.9e-250 860.9
Cme11g01780 . 1 459 Eukaryotic Initiation Factors Gene Family AT1G07920 92.8 6.4e-250 859.8
Cme09g00630 . 1 411 Eukaryotic Initiation Factors Gene Family AT1G07920 87.1 2.7e-224 774.6
Cme09g00618 . 1 273 Eukaryotic Initiation Factors Gene Family AT1G07920 57.2 8.4e-125 444.1
Cme11g01780 . 1 459 Eukaryotic Initiation Factors Gene Family AT1G07930 78.0 5.6e-199 690.3
Cme05g00722 . 1 464 Eukaryotic Initiation Factors Gene Family AT1G07930 77.4 3.6e-198 687.6
Cme09g00630 . 1 411 Eukaryotic Initiation Factors Gene Family AT1G07930 83.5 1.4e-194 675.6
Cme09g00618 . 1 273 Eukaryotic Initiation Factors Gene Family AT1G07930 59.9 2.4e-109 392.5
Cme05g00722 . 1 464 Eukaryotic Initiation Factors Gene Family AT1G07940 92.7 2.9e-250 860.9
Cme11g01780 . 1 459 Eukaryotic Initiation Factors Gene Family AT1G07940 92.8 6.4e-250 859.8
Cme09g00630 . 1 411 Eukaryotic Initiation Factors Gene Family AT1G07940 87.1 2.7e-224 774.6
Cme09g00618 . 1 273 Eukaryotic Initiation Factors Gene Family AT1G07940 57.2 8.4e-125 444.1
Cme05g00722 . 1 464 Eukaryotic Initiation Factors Gene Family AT5G60390 92.7 2.9e-250 860.9
Cme11g01780 . 1 459 Eukaryotic Initiation Factors Gene Family AT5G60390 92.8 6.4e-250 859.8
Cme09g00630 . 1 411 Eukaryotic Initiation Factors Gene Family AT5G60390 87.1 2.7e-224 774.6
Cme09g00618 . 1 273 Eukaryotic Initiation Factors Gene Family AT5G60390 57.2 8.4e-125 444.1
Cme03g00995 . 1 219 Eukaryotic Initiation Factors Gene Family AT5G12110 52.4 4.8e-52 201.4
Cme12g01596 . 1 226 Eukaryotic Initiation Factors Gene Family AT5G12110 52.2 9.5e-48 187.2
Cme12g01596 . 1 226 Eukaryotic Initiation Factors Gene Family AT5G19510 61.9 4.3e-53 204.9
Cme03g00995 . 1 219 Eukaryotic Initiation Factors Gene Family AT5G19510 57.8 6.9e-51 197.6
Cme03g00995 . 4 219 Eukaryotic Initiation Factors Gene Family AT1G30230 71.2 6.5e-69 257.7
Cme12g01596 . 7 226 Eukaryotic Initiation Factors Gene Family AT1G30230 76.1 2.5e-68 255.8
Cme03g00995 . 4 219 Eukaryotic Initiation Factors Gene Family AT2G18110 73.4 5.6e-72 267.7
Cme12g01596 . 4 226 Eukaryotic Initiation Factors Gene Family AT2G18110 76.9 4.7e-71 264.6
Cme10g01287 . 60 481 Eukaryotic Initiation Factors Gene Family AT1G57720 71.1 2.7e-170 595.1
Cme06g02162 . 1 407 Eukaryotic Initiation Factors Gene Family AT1G57720 69.8 2.9e-164 575.1
Cme06g02163 . 1 326 Eukaryotic Initiation Factors Gene Family AT1G57720 56.7 2.8e-122 435.6
Cme11g01583 . 1 463 Eukaryotic Initiation Factors Gene Family AT1G56070 94.2 3.5e-257 884.8
Cme11g01545 . 1 322 Eukaryotic Initiation Factors Gene Family AT1G56070 93.8 1.2e-177 620.5
Cme11g01547 . 76 353 Eukaryotic Initiation Factors Gene Family AT1G56070 91.5 2.5e-146 516.5
Cme11g01544 . 1 259 Eukaryotic Initiation Factors Gene Family AT1G56070 95.4 5.4e-141 498.8
Cme01g01064 . 1 1034 Eukaryotic Initiation Factors Gene Family AT3G22980 71.5 0.0e+00 1445.6
Cme08g02376 . 1 434 Eukaryotic Initiation Factors Gene Family AT5G47880 88.2 4.2e-222 767.3
Cme11g02380 . 1 434 Eukaryotic Initiation Factors Gene Family AT5G47880 88.0 2.1e-221 765.0
Cme08g02376 . 4 436 Eukaryotic Initiation Factors Gene Family AT1G12920 89.6 8.7e-228 786.2
Cme11g02380 . 4 436 Eukaryotic Initiation Factors Gene Family AT1G12920 89.4 4.3e-227 783.9
Cme08g02376 . 1 436 Eukaryotic Initiation Factors Gene Family AT3G26618 90.8 2.5e-230 794.7
Cme11g02380 . 1 436 Eukaryotic Initiation Factors Gene Family AT3G26618 90.6 1.2e-229 792.3
Cme04g00348 . 1 681 Eukaryotic Initiation Factors Gene Family AT5G10630 57.7 8.2e-201 697.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001217 4 2 2 3 3 2 3 2 2 2 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 2 3 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01347 Cme_Chr06 FPKM 25.626268 27.195412 31.885199 30.918396 22.458302 20.487354 23.59305 100.49868 102.88327 102.103584