Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01378 ATGGGCAGCATTGAATCTGAAAGAACTGTTACAGGTTTCGCCGCCAAAGACCCATCTGGGATTCTCTCTCCTTATACTTACACTCTCAGAAACACCGGTCCACAAGATGTTTTCATCAAAGTCATTTGCTGTGGAATCTGCCACTCTGATCTCCACCAAGTCAAGAACGAGCTCGGCATGTCCAATTACCCCATGGTTCCTGGACACGAAGTCGTCGGAGAAGTGGTGGAGCTTGGATCGGAAGTGGATCGTTTCAGAATTGGGGAATTGGTTGGAGTTGGGTGTATTCTTGGATCTTGTTCCACTTGTAGTCCTTGTAACTCCGACAAGGAGCAGTACTGTCATAAGAGAATCTGGACTTATAATGATGTGTATCACGATGGCCGTCCCACCCAAGGCGGTTTCTCCTCCGCCATGGTCGTCCACCAGAAGTTTGTTGTAAGAATCCCAGAAGGGATGTCACCGGAGCAGGCGGCGCCGCTGCTGTGCGCGGGAGTGACGGTGTACAGTCCATTGAGTCACTTTGGACTGAAACAGAGTGGGCTAAGAGGCGGAATTTTGGGACTGGGCGGCGTTGGACATATGGGTGTGAAAGTGGCAAAGGCTTTGGGCCATCACGTGACGGTGATAAGCTCGTCGGAGAAGAAAAGAGAGGAGGCTCTGGAACATCTTGGTGCCGACGATTACTTGGTCAGCTCCGACAAGGCTCAAATGGACCGAGCCATTGACTCACTCGATTACATTATCGACACCGTCCCTGTTTTTCATCCGCTCGAGCCATATCTCTCACTGCTAAAACTCGACGGAAAATTGATCTTGATGGGTGTCATTAATACTCCATTACAATTTGTTTCCCCTCTCCTTATGATCGGGAGGAAGACGATTACAGGGAGCTTCATCGGAAGTATGAGAGAGACGCAAGAAGTATTGGATTTCTTTAAAGAGAAGGAACTGACCTCAATGATTGAAGTGATAAAGGTTGATTATATAAACAAGGCTTTCGAGAGGTTGGAGAAGAACGATGTTAGATACAGGTTCGTGGTGGACGTTGCTGGTAGTAAGATGCCTGAGTGA 1074 48.32 MGSIESERTVTGFAAKDPSGILSPYTYTLRNTGPQDVFIKVICCGICHSDLHQVKNELGMSNYPMVPGHEVVGEVVELGSEVDRFRIGELVGVGCILGSCSTCSPCNSDKEQYCHKRIWTYNDVYHDGRPTQGGFSSAMVVHQKFVVRIPEGMSPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSEKKREEALEHLGADDYLVSSDKAQMDRAIDSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVSPLLMIGRKTITGSFIGSMRETQEVLDFFKEKELTSMIEVIKVDYINKAFERLEKNDVRYRFVVDVAGSKMPE 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12016238 12018204 - MELO3C019548.2.1 Cme06g01378 330527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01378 357 CDD CAD1 11 349 - -
Cme06g01378 357 Pfam Zinc-binding dehydrogenase 191 314 IPR013149 -
Cme06g01378 357 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Cme06g01378 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 318 IPR036291 -
Cme06g01378 357 PANTHER ALDEHYDE REDUCTASE 5 355 - -
Cme06g01378 357 SUPERFAMILY GroES-like 17 181 IPR011032 -
Cme06g01378 357 Gene3D - 13 350 - -
Cme06g01378 357 SMART PKS_ER_names_mod 20 348 IPR020843 GO:0016491
Cme06g01378 357 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 5 355 - -
Cme06g01378 357 Pfam Alcohol dehydrogenase GroES-like domain 35 148 IPR013154 -
Cme06g01378 357 Gene3D - 164 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01378 Cme-Chr6:12016238 Cme11g00083 Cme-Chr11:693602 7.44E-115 dispersed
Cme04g00447 Cme-Chr4:3546623 Cme06g01378 Cme-Chr6:12016238 1.79E-91 transposed
Cme08g00714 Cme-Chr8:4754121 Cme06g01378 Cme-Chr6:12016238 2.61E-126 transposed
Cme09g01902 Cme-Chr9:23162589 Cme06g01378 Cme-Chr6:12016238 2.41E-100 transposed
Cme01g00092 Cme-Chr1:632059 Cme06g01378 Cme-Chr6:12016238 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01378 K00083 - csv:101222395 688.723