Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01406 TCCAAAGCTCCCACCTTTAATTTTTTTCCCTTTTCAAAATTCAATAACCCCCATCTTCTACTCTTTCTTTTTTTCATTTCCTTCATCATCAAGTTAGCAAGAAAAAAAAAAGCTGCTATTAGTTTGCTAAAGCAAAAACAAGAAGAACAAAAGAGGTTAGGGAGAAGCAAAAAAAAAAAAATGCCCTTAGAAGGTATTTTTATTGAACCTTCTTCAACCTCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCTTCATCGTCTTCTTCGTCGTCTTCTTCATATTCATCAATTAGAACCCTTAGCCATGGATTTTCAGAAACAAGTTCTGATCTTTTGATTCAAAGAAACTCCCAATTCCAAAATAATTTCTCAAATGAGTCTCAAACTCAAACCGATCTCTCTTTAGGAACCAACAACAGCAACTTGTTCGGTGGAGCAGCACTACATCCACCGCCGCCGCTCCCGCATCTTCGAGGGCTTTCGATGTTCGACGTATCATCGGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTAGATCAAAAAGATCACCATTATTTTCACCAATTTCCATCAGCTTGCTTCTTCCCAAATTACTCAAATACGAACGGAAACAGCGGCGGAGGAGGAGTGGCTCAAATGGGTTATTATCATCGAGGCGGCGGAGGAGTTGGAGGGAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGGTTGTTTGTGCAGAAGCAATTAATAAATGTTTGAATAATAATAGTAATAGTAATAGTAATAATAATAATGCAGCTTCTTGTTGTTGTTCTTCTTCTTCTGATGTTTGTTCTTCTCATGGGATGATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTCCAAAACGAAGCATGAGAGCTCCTCGAATGAGATGGACTACCTCCTTACATGCTCGCTTTGTTCATGCTGTCGAACATCTCGGTGGCCATGAAAGAGCAACACCAAAGTCAGTTCTTGAGCTGATGGATGTTAAGGATCTAACACTAGCTCATGTCAAAAGTCATTTACAGATGTATCGAACTGTTAAGACTACTGACAAACCTGCAGCTTCCTCAGGCCAATCGGATGGCTCGGGAGAGGACGATGTATCTCCTACAATAATGGGCACGACCAGAGGAGATCACGGTGGCTCTAAGCAATTTTGCGATCAAAGAGCTCCACCCGACCGGTCCGCCCAGCCGCCGTCAGATATGGAATTTGGCTGCTCCACACTTTGGTCTAATTCTTCAAGAGATGTTTGGCCACAAACAAACTCTAATGAAATGGATAATGTCAATACACCAACTTTGTCAACACAACGAAAATTCATGCACCAAATTCAGGAATGTGATTCAGGTGCAATCAAAAGATACAATTCAGAGTGCAAGAAACCGAGCTTGGAGTTCAGATTAGGCAGAGCAGAGTGGGATGTGAAACAAGATCACTAA 1512 41.34 SKAPTFNFFPFSKFNNPHLLLFLFFISFIIKLARKKKAAISLLKQKQEEQKRLGRSKKKKMPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSYSSIRTLSHGFSETSSDLLIQRNSQFQNNFSNESQTQTDLSLGTNNSNLFGGAALHPPPPLPHLRGLSMFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTNGNSGGGGVAQMGYYHRGGGGVGGNNNNCSARFNNGVVCAEAINKCLNNNSNSNSNNNNAASCCCSSSSDVCSSHGMMMMRSRFLQKLPPKRSMRAPRMRWTTSLHARFVHAVEHLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDDVSPTIMGTTRGDHGGSKQFCDQRAPPDRSAQPPSDMEFGCSTLWSNSSRDVWPQTNSNEMDNVNTPTLSTQRKFMHQIQECDSGAIKRYNSECKKPSLEFRLGRAEWDVKQDH 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12420063 12426444 - MELO3C019573.2.1 Cme06g01406 330555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01406 503 MobiDBLite consensus disorder prediction 372 393 - -
Cme06g01406 503 MobiDBLite consensus disorder prediction 77 100 - -
Cme06g01406 503 PANTHER TRANSCRIPTION REPRESSOR KAN1 61 501 - -
Cme06g01406 503 SUPERFAMILY Homeodomain-like 313 369 IPR009057 -
Cme06g01406 503 Gene3D - 315 372 - -
Cme06g01406 503 Pfam Myb-like DNA-binding domain 317 368 IPR001005 -
Cme06g01406 503 MobiDBLite consensus disorder prediction 372 428 - -
Cme06g01406 503 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 61 501 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cme06g01406 503 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 316 369 IPR006447 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01406 - - - csv:101204946 725.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01406 Cme-Chr6:12420063 Cme12g01809 Cme-Chr12:24557665 3.12E-38 dispersed
Cme06g02445 Cme-Chr6:31500133 Cme06g01406 Cme-Chr6:12420063 3.97E-12 dispersed
Cme06g01406 Cme-Chr6:12420063 Cme04g00145 Cme-Chr4:1097100 1.85E-51 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme06g01406 . 298 500 G2-like Transcription Factor Family AT5G16560 54.5 1.6e-45 180.6
Cme04g00145 . 298 503 G2-like Transcription Factor Family AT5G16560 50.9 6.4e-39 158.7
Cme04g00674 CCT 1 159 G2-like Transcription Factor Family AT5G42630 59.0 4.3e-37 151.8
Cme02g01289 CCT 4 340 G2-like Transcription Factor Family AT2G03500 51.4 6.1e-80 295.0
Cme03g00787 . 20 258 G2-like Transcription Factor Family AT1G25550 55.2 1.3e-51 200.3
Cme10g00288 . 19 255 G2-like Transcription Factor Family AT1G25550 53.4 2.6e-47 186.0
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT5G05090 55.7 2.5e-76 282.3
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT5G05090 55.9 4.9e-72 268.1
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme01g01493 CCT 1 379 G2-like Transcription Factor Family AT1G79430 53.1 4.0e-85 312.0
Cme11g01645 CCT 1 223 G2-like Transcription Factor Family AT1G79430 72.3 4.9e-75 278.5
Cme04g01787 . 72 273 G2-like Transcription Factor Family AT5G18240 52.7 1.2e-40 164.1
Cme08g01008 . 54 270 G2-like Transcription Factor Family AT2G01060 65.2 1.2e-53 206.8
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT3G10760 63.5 6.4e-93 337.8
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT3G10760 59.2 4.6e-83 305.1
Cme08g01427 . 1 203 G2-like Transcription Factor Family AT2G40970 62.1 2.3e-63 239.2
Cme04g02132 . 1 199 G2-like Transcription Factor Family AT2G40970 63.3 1.1e-57 220.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006004 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41508 PF00249 Myb_DNA-binding 2.50E-05 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01406 Cme_Chr06 FPKM 0.0 0.0 0.851759 0.797343 0.0 0.0 0.160336 1.769327 1.78309 1.766963