Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01406 TCCAAAGCTCCCACCTTTAATTTTTTTCCCTTTTCAAAATTCAATAACCCCCATCTTCTACTCTTTCTTTTTTTCATTTCCTTCATCATCAAGTTAGCAAGAAAAAAAAAAGCTGCTATTAGTTTGCTAAAGCAAAAACAAGAAGAACAAAAGAGGTTAGGGAGAAGCAAAAAAAAAAAAATGCCCTTAGAAGGTATTTTTATTGAACCTTCTTCAACCTCACTTCCTGATCTCTCTCTTCAAATCAGCCCTCCAAATGTTTCTTCTTCTTCTTCATCGTCTTCTTCGTCGTCTTCTTCATATTCATCAATTAGAACCCTTAGCCATGGATTTTCAGAAACAAGTTCTGATCTTTTGATTCAAAGAAACTCCCAATTCCAAAATAATTTCTCAAATGAGTCTCAAACTCAAACCGATCTCTCTTTAGGAACCAACAACAGCAACTTGTTCGGTGGAGCAGCACTACATCCACCGCCGCCGCTCCCGCATCTTCGAGGGCTTTCGATGTTCGACGTATCATCGGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTAGATCAAAAAGATCACCATTATTTTCACCAATTTCCATCAGCTTGCTTCTTCCCAAATTACTCAAATACGAACGGAAACAGCGGCGGAGGAGGAGTGGCTCAAATGGGTTATTATCATCGAGGCGGCGGAGGAGTTGGAGGGAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGGTTGTTTGTGCAGAAGCAATTAATAAATGTTTGAATAATAATAGTAATAGTAATAGTAATAATAATAATGCAGCTTCTTGTTGTTGTTCTTCTTCTTCTGATGTTTGTTCTTCTCATGGGATGATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTCCAAAACGAAGCATGAGAGCTCCTCGAATGAGATGGACTACCTCCTTACATGCTCGCTTTGTTCATGCTGTCGAACATCTCGGTGGCCATGAAAGAGCAACACCAAAGTCAGTTCTTGAGCTGATGGATGTTAAGGATCTAACACTAGCTCATGTCAAAAGTCATTTACAGATGTATCGAACTGTTAAGACTACTGACAAACCTGCAGCTTCCTCAGGCCAATCGGATGGCTCGGGAGAGGACGATGTATCTCCTACAATAATGGGCACGACCAGAGGAGATCACGGTGGCTCTAAGCAATTTTGCGATCAAAGAGCTCCACCCGACCGGTCCGCCCAGCCGCCGTCAGATATGGAATTTGGCTGCTCCACACTTTGGTCTAATTCTTCAAGAGATGTTTGGCCACAAACAAACTCTAATGAAATGGATAATGTCAATACACCAACTTTGTCAACACAACGAAAATTCATGCACCAAATTCAGGAATGTGATTCAGGTGCAATCAAAAGATACAATTCAGAGTGCAAGAAACCGAGCTTGGAGTTCAGATTAGGCAGAGCAGAGTGGGATGTGAAACAAGATCACTAA 1512 41.34 SKAPTFNFFPFSKFNNPHLLLFLFFISFIIKLARKKKAAISLLKQKQEEQKRLGRSKKKKMPLEGIFIEPSSTSLPDLSLQISPPNVSSSSSSSSSSSSSYSSIRTLSHGFSETSSDLLIQRNSQFQNNFSNESQTQTDLSLGTNNSNLFGGAALHPPPPLPHLRGLSMFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYSNTNGNSGGGGVAQMGYYHRGGGGVGGNNNNCSARFNNGVVCAEAINKCLNNNSNSNSNNNNAASCCCSSSSDVCSSHGMMMMRSRFLQKLPPKRSMRAPRMRWTTSLHARFVHAVEHLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDDVSPTIMGTTRGDHGGSKQFCDQRAPPDRSAQPPSDMEFGCSTLWSNSSRDVWPQTNSNEMDNVNTPTLSTQRKFMHQIQECDSGAIKRYNSECKKPSLEFRLGRAEWDVKQDH 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12420063 12426444 - MELO3C019573.2.1 Cme06g01406 330555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01406 503 MobiDBLite consensus disorder prediction 372 393 - -
Cme06g01406 503 MobiDBLite consensus disorder prediction 77 100 - -
Cme06g01406 503 PANTHER TRANSCRIPTION REPRESSOR KAN1 61 501 - -
Cme06g01406 503 SUPERFAMILY Homeodomain-like 313 369 IPR009057 -
Cme06g01406 503 Gene3D - 315 372 - -
Cme06g01406 503 Pfam Myb-like DNA-binding domain 317 368 IPR001005 -
Cme06g01406 503 MobiDBLite consensus disorder prediction 372 428 - -
Cme06g01406 503 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 61 501 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cme06g01406 503 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 316 369 IPR006447 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01406 Cme-Chr6:12420063 Cme12g01809 Cme-Chr12:24557665 3.12E-38 dispersed
Cme06g02445 Cme-Chr6:31500133 Cme06g01406 Cme-Chr6:12420063 3.97E-12 dispersed
Cme06g01406 Cme-Chr6:12420063 Cme04g00145 Cme-Chr4:1097100 1.85E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41508 PF00249 Myb_DNA-binding 2.50E-05 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01406 - - csv:101204946 725.702