Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01482 ATGGCAACCAAGATCGACGGAATTGAAGACGAAGAAATTTCAAAGCTCGAAGAAGGCACTGTCGTTTCCGCCATTGCTCGCCTCTGTCCCTCCAATTCAGTCGTCATCATCCAAAAGGTAATCGCGGAATTGATCGGGACGTACTTCGTGATCTTCAGCGGATGTGGGGCGGTGGCGGTGAACAAAATATACGGATCAGTGACATTTCCGGGAATCTGTGTGGTTTGGGGATTGATTGTAATGGTAATGGTGTATTCGGTGGGACATGTCTCTGGAGCGCATTTCAACCCTGCTGTTACTTTCACCTTCGCCCTTTTTCGTCGTTTCCCCTTCTGGCAGGTGCCAATATACACAGGAGCTCAACTAATGGGGTCCCTTCTCGCAAGCTGCACATTGGATCTAATGCTTGAAGTGACCCCAGAAGCCTTCTTTGGAACAGTGCCCGTTGGATCCAATGTTCAATCTTTGGTTCTTGAAATTATCATCACATTTCTTTTGATGTTTGTCATCTCTGGTGTCTCCACCGATAATAGAGCCGTAGGAGAATTGGGTGGAATTGTGGTTGGAATGACCATTCTCTTGAATGTTTTCGTCGCCGGGCCGATTTCTGGAGCTTCTATGAATCCGGCAAGGACTATTGGACCAGCCATAGTGAAACGGCAGTTTAAAGGACTATGGGTTTACATAGTAGGACCCTTTATCGGAGCGGTCGCCGGTGGATTTGTCTATAACCTAATGAGATACACAGACAAGCCGCTGCGGGAGATCACCAGAAGCACTTCATTCCTCACCGGCACCCTGAAATCATAA 810 47.78 MATKIDGIEDEEISKLEEGTVVSAIARLCPSNSVVIIQKVIAELIGTYFVIFSGCGAVAVNKIYGSVTFPGICVVWGLIVMVMVYSVGHVSGAHFNPAVTFTFALFRRFPFWQVPIYTGAQLMGSLLASCTLDLMLEVTPEAFFGTVPVGSNVQSLVLEIIITFLLMFVISGVSTDNRAVGELGGIVVGMTILLNVFVAGPISGASMNPARTIGPAIVKRQFKGLWVYIVGPFIGAVAGGFVYNLMRYTDKPLREITRSTSFLTGTLKS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14138665 14142333 - MELO3C020281.2.1 Cme06g01482 330631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01482 269 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Cme06g01482 269 TIGRFAM MIP: MIP family channel proteins 42 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme06g01482 269 CDD MIP 38 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme06g01482 269 Gene3D Glycerol uptake facilitator protein. 6 256 IPR023271 -
Cme06g01482 269 PANTHER AQUAPORIN NIP4-1-RELATED 25 257 - -
Cme06g01482 269 Pfam Major intrinsic protein 33 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme06g01482 269 PANTHER AQUAPORIN NIP2-1 25 257 IPR034294 -
Cme06g01482 269 SUPERFAMILY Aquaporin-like 36 256 IPR023271 -
Cme06g01482 269 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme06g01482 269 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme06g01482 269 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme06g01482 269 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme06g01482 269 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme06g01482 269 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00721 Cme-Chr2:8672157 Cme06g01482 Cme-Chr6:14138665 9.95E-51 dispersed
Cme06g00639 Cme-Chr6:4121946 Cme06g01482 Cme-Chr6:14138665 9.89E-47 dispersed
Cme06g01482 Cme-Chr6:14138665 Cme08g00198 Cme-Chr8:1344229 1.53E-105 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01482 K09874 - csv:101215315 500.36