Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01534 ATGATCTTTTCATGGAGGAAAAACAAATTGGGGTTTCTTACAAAGTTGAAGAAACAACTTCCAGGTGTCGATTGCGGTTCCGAAATTGCGATTCCTTCACATTATATGTGTCCGATTTCGCTTGATTTGATGAAGGACCCTGTGATTTTGTCCACTGGGATTACTTACGATAGAGAGAGTATCGAGAAGTGGATTGATGGGGGAAATTTTTCATGTCCTGTGACGAAACAGGAATTGACTGTTTTCGACCTAATCCCTAATCATGCATTGAGGAGGTTGATCCAAGATTGGTGTGTTGCGAATCGGTCATACGGGATTGAGCGGATTCCGACCCCGCGGATTCCAGTCTCCCCGTATGAAGTTAAGGAGATTTGTTCGAGAATATCAATCGCGACTCAAAGAAGCGATTTGAAGAGGTGCAGTGAATTGATGGGTAAGATCAGGAATTGGGCCAAAGAGAGCGAGAGGAATCGGAGGTGTCTTGTAAATGGAGGAACTGGGGATGTTTTAGCAGCCTCGTTTGAGCATTTTGCTGGTGTTTCGATTGAGAAACATGTGGGTTTATTGGAGGAGATTTTATTGGTTTTGACTTGTATATTTCCAGTCGCCATTGAAGGCATATCTAAGCTTGGATCTGCGGGTTCTTTGAAATGCTTGGTTTCCTTCTTAATCGGTAAAGATCTCTCTCCCAAACAGAGCGCAGTTTTTGTTCTGAAAGAACTCTTGGCAGCTGATCGAAGATATGTTAATTCATTGGCTGCGATTGAAGGAGTATCTGAAGCTTTAGTTAGCATTATCAGGGATCCTCTTTGCCCCTCTAATACAAAATCATCCCTTACAGTCATTTTCTACATGATTTTACCATCAGATATTGGCGAGAAAATGGCATTGAAATTTGTGGAACTCGGCTTGGTCTCTCAGCTACTAGAATTTCTGGTAGATGCAGAGAAAAGTCTATGTGAGAAGGCTTTGGGAATTTTGGATGGAATTTGTGATTACAAACAAGGGAGAGAGAAGCTTTATAATAATGCACTAACTATTCCACTCTTAGTCAAGAAGATCCTAAGAGTTTCAGAGTTAGCCACTGAATATTCTCTGTCAATATTGTTGAAGCTCTGCAAGAGTGGTGAGAAGGGCGAGGATGAGGTGAGAGTTGAAGCAGCCCAACTGGGTGCTTTCCAGAAGATATTGGTTCTCTTGCAGGTTGGTTGTGGTGGTGACATGAAAGACAAGGTCACTGAGATGTTGAAATTATTGAATCTCTACAAAGATAGGCTAGATTGTATTGATTCGTCCATGCATTTTAAGTACTTGAAGAAATCATTTTGA 1329 41.46 MIFSWRKNKLGFLTKLKKQLPGVDCGSEIAIPSHYMCPISLDLMKDPVILSTGITYDRESIEKWIDGGNFSCPVTKQELTVFDLIPNHALRRLIQDWCVANRSYGIERIPTPRIPVSPYEVKEICSRISIATQRSDLKRCSELMGKIRNWAKESERNRRCLVNGGTGDVLAASFEHFAGVSIEKHVGLLEEILLVLTCIFPVAIEGISKLGSAGSLKCLVSFLIGKDLSPKQSAVFVLKELLAADRRYVNSLAAIEGVSEALVSIIRDPLCPSNTKSSLTVIFYMILPSDIGEKMALKFVELGLVSQLLEFLVDAEKSLCEKALGILDGICDYKQGREKLYNNALTIPLLVKKILRVSELATEYSLSILLKLCKSGEKGEDEVRVEAAQLGAFQKILVLLQVGCGGDMKDKVTEMLKLLNLYKDRLDCIDSSMHFKYLKKSF 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14946355 14948035 + MELO3C020245.2.1 Cme06g01534 330683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01534 442 PANTHER WDSAM1 PROTEIN 26 442 IPR045185 GO:0061630
Cme06g01534 442 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Cme06g01534 442 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 26 442 - -
Cme06g01534 442 SUPERFAMILY ARM repeat 189 375 IPR016024 -
Cme06g01534 442 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Cme06g01534 442 SUPERFAMILY RING/U-box 29 107 - -
Cme06g01534 442 CDD RING-Ubox_PUB 37 77 IPR045210 -
Cme06g01534 442 Pfam U-box domain 31 102 IPR003613 GO:0004842|GO:0016567
Cme06g01534 442 Gene3D - 122 417 IPR011989 -
Cme06g01534 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 108 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01534 Cme-Chr6:14946355 Cme07g00440 Cme-Chr7:2979812 4.39E-158 dispersed
Cme06g01534 Cme-Chr6:14946355 Cme04g02322 Cme-Chr4:30163072 2.18E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01534 - - csv:101220059 850.121