Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01547 ATGGAGTTTCCACATTGGTTTTTAACGGCGGCGGTTCTGGGTTTCGCCTTTCTGGGTTTTGTCCGGACGGATCTGGCATCTGATAGGGCGGCGTTGGTGGGTTTTCGGGCGGCGATGGGTGGCCGGCCCCGATTAGAGTGGAATCTCTCCGATGTATCTCCCTGTTCTTGGGCTGGTGTTAACTGTGACAGGAATGGGGTTTTTGAGCTCCGGCTTCCCGCTATGGGGCTTTCCGGTGAGCTTCCGATGGGGCTTGGGAATTTGACGCAGTTGCAAACTCTTTCTCTAAGGTTTAATGCTCTGTCTGGACGGATTCCGGCGGATTTTGAGAATCTTCGTGGGTTGAGGAATCTTTACTTGCAGGGGAACTTGTTTTCTGGGGAGATTCCGCCGTTTCTGTTTGATTTGCAGAATTTGGTTCGGTTGAACATGGCGGACAACAACTTTACAGGTGAGATTTCATCTGGGTTCAACAATTTGTCCCGTTTGGCTACTCTGTATTTACAGAACAATCGGTTTACTGGAGTTGTTCCTGAGTTAAATCTCACTCTTGAGCAATTTAATGTCTCGTTTAACCAATTGAACGGTTCGATTCCAACGAAGCTCTCTAGTTTTCCGGCTAGTTCTTTCGAGGGGAATTTTCTCTGTGGGGCGCCATTGTTACTCTGTAACTCAACAGCGACCGAGCCCAGTCCAAAGTCGAAGCTCTCCGGTGGGGCGATTGCTGGAATTGTGATTGGTGGCTTGTTTGTTTTGGCGTTGATTTTGGTTGTTTTGATTCTTGTGTGTCAAAGAAAGAGTAAGGAGAAATCGGAGACGAAAGAGGTGGTTCGGTCGAGAGGTGAGGTTGAGGTGCCGGGAGAGAAGACTACGACAGTGGAAGGGAGTAGCGAAAGAATAAACATAGATCATTTGATTGCACCAAAATCATCGACAAAGGGAAGCGAAAGAGATAAGAAATTGGTGTTCTTTGGGAATGTGGGAAATGTGTTTGATTTGGAGGATTTGTTGAGGGCATCGGCAGAAGTCCTTGGGAAGGGGACGTTTGGGACCGCATATAAGGCGACATTGGAGACGGGGATGGTGGTGGCCGTGAAGCGGTTGAAGGAGATGACGGCAGCGGAGAAGGAATTCAGGGAGAAAATGGAGGAGGCGGGGAGGATGAAGAATGAGAATTTGGTCCCTTTTAGAGCTTATTATTACAGCAGAGAGGAAAAGCTTTTGGTTTATGATTACATGCCAATGGGAAGCTTGTCTGCACTTTTACATGGTAGTAGAGAGTCGGGAAGGACTCCTTTGAATTGGGAAGCAAGGTGTGGCATAGCCCTCGGAGTCGGCCGAGGGATTCATTACCTTCACTCTCAAGGCCCTACCATCTCTCACGGCAACATTAAGTCCTCAAACATTCTCCTCACCAGATCATACGAAGCGTGCGTATCCGACTACGGCCTTGCACAACTAGCCATGGCCCCCTCGACTCCAAGTCGTGTTGCTGGGTATCGAGCCCCAGAGGTTACCGATTCTCGAAAGGTATCACATAAAGCAGATGTTTATAGCTTTGGAGTGTTGTTACTGGAGATGCTAACAGGAAAATCTCCTACACATTCTATTTTCCATGAGGAAGCCGTGGATCTTCCTAGATGGGTTCAATCTGTGGTTCAAGAGGAATGGACGGCTGAAGTGTTTGATGAACAACTTCTAAGGTACCAAAATGTTGAAGAGGAAATGGTACAACTCTTGGAACTTGCATTGCAATGCACTGTCCCGTATCCAGATAATCGTCCTGGAATGGATGAGATTGTTGGACGCATTGAAGAACTTTGTCGGACGACCTTGCAAAAGCAGAGCGAGGGGATTGAGAATGATGGAAATAATGGTATTTCCTCACAGTTTCATTCACTAAGCTCACCTCATCCACCATCTGCAGAGTAG 1932 47.72 MEFPHWFLTAAVLGFAFLGFVRTDLASDRAALVGFRAAMGGRPRLEWNLSDVSPCSWAGVNCDRNGVFELRLPAMGLSGELPMGLGNLTQLQTLSLRFNALSGRIPADFENLRGLRNLYLQGNLFSGEIPPFLFDLQNLVRLNMADNNFTGEISSGFNNLSRLATLYLQNNRFTGVVPELNLTLEQFNVSFNQLNGSIPTKLSSFPASSFEGNFLCGAPLLLCNSTATEPSPKSKLSGGAIAGIVIGGLFVLALILVVLILVCQRKSKEKSETKEVVRSRGEVEVPGEKTTTVEGSSERINIDHLIAPKSSTKGSERDKKLVFFGNVGNVFDLEDLLRASAEVLGKGTFGTAYKATLETGMVVAVKRLKEMTAAEKEFREKMEEAGRMKNENLVPFRAYYYSREEKLLVYDYMPMGSLSALLHGSRESGRTPLNWEARCGIALGVGRGIHYLHSQGPTISHGNIKSSNILLTRSYEACVSDYGLAQLAMAPSTPSRVAGYRAPEVTDSRKVSHKADVYSFGVLLLEMLTGKSPTHSIFHEEAVDLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLELALQCTVPYPDNRPGMDEIVGRIEELCRTTLQKQSEGIENDGNNGISSQFHSLSSPHPPSAE 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15328506 15331047 - MELO3C020229.2.1 Cme06g01547 330696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01547 643 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cme06g01547 643 SUPERFAMILY L domain-like 46 205 - -
Cme06g01547 643 SUPERFAMILY Protein kinase-like (PK-like) 342 603 IPR011009 -
Cme06g01547 643 Gene3D Ribonuclease Inhibitor 182 227 IPR032675 -
Cme06g01547 643 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Cme06g01547 643 Gene3D Transferase(Phosphotransferase) domain 1 413 629 - -
Cme06g01547 643 SMART LRR_typ_2 112 136 IPR003591 -
Cme06g01547 643 SMART LRR_typ_2 88 111 IPR003591 -
Cme06g01547 643 SMART LRR_typ_2 160 183 IPR003591 -
Cme06g01547 643 Coils Coil 371 391 - -
Cme06g01547 643 Pfam Protein kinase domain 341 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01547 643 PANTHER OS05G0588300 PROTEIN 18 608 - -
Cme06g01547 643 Gene3D Ribonuclease Inhibitor 26 181 IPR032675 -
Cme06g01547 643 PANTHER LRR RECEPTOR-LIKE KINASE 18 608 - -
Cme06g01547 643 MobiDBLite consensus disorder prediction 617 643 - -
Cme06g01547 643 Gene3D Phosphorylase Kinase; domain 1 307 412 - -
Cme06g01547 643 ProSiteProfiles Protein kinase domain profile. 338 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01547 Cme-Chr6:15328506 Cme12g01818 Cme-Chr12:24622113 0 dispersed
Cme07g00938 Cme-Chr7:9844632 Cme06g01547 Cme-Chr6:15328506 1.25E-112 dispersed
Cme06g01547 Cme-Chr6:15328506 Cme05g01954 Cme-Chr5:28090976 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64962 PF00069 Pkinase 1.80E-36 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01547 - - csv:101221942 1184.09