Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01579 ATGAAGCGAGACCACACCCAACAATCCTCAAATCCAGCCGCCGCCGGCAAGCCCAAGAAATGGGCAGTCGAAGAGGAGGAAGACCACGACAAGCATCTAGCTGCTCTTGGCTACAATGTCCGGTTGTCGGACATGGCGGACGTTGCTTTGAAACTGGAACAGTTAGAAATGGTAATGGGTTTGTCGGAAGAAGATGGAATTTCTCACCTCTCTTCAAATACAGTCCATTACAATCCTTCCGATGTTTCTTCTTGGGTTCAAAGCATGCTCGTTGAACTCAATACTCCGCTTCAATCCCAGGGAATAATTCACGACCCTGTTCTTGCCATAGCTGAATCCACTTCCTTCTCCGTGGCCGCTGCCTTCACCAATGATTCCGAGTACGATCTCAGAGCCATTCCCGGCGTTGCTGCTTTCCCACAAATCGATTCCTCCAACCCCAGAAAGCGATTCAAGAAATCTGATTCTGAATCCCTTCTTGTTACTGCATCTTCTTCTACTTCTTCGTCGTCCTCGTCAGAGCCGTCGCGCTCGGTGGTTCTGGTGGATTCTGCCGAGACTGGTGTCCGTCTAGTCCACAGCCTTCTCGCCTGCGCAGACGCCGTCGACAATAACAATCTAAATCTCGCCGAGGCTCTACTCAAACACATCAGATTCCTCGTTGAGGCTCAGGCAGGTGCTATGAGGAAAGTCGCCGGATATTTCGCTCAAGCTCTCACTTACCGGATTTACAGATTCTACCCACCGAAGCCCTTCGATTATTTATCTTCATACACCGATCTTCTTCAAATGCATTTCTATGAAACTAGCCCCTATCTGAAATTCGCCCATTTCACTGCCAATCAAGCCATTCTCGAATCCGTTGGATCTGCTAGTTCCATCCACGTCGTCGATTTCAACCTCCAGCAAGGTCACCAATGGCCGCCGTTGATTCAGGCTTTCGCGCTCCGACCAGGTGGGCCTCCGGCGTTTCATCTTACTGGAGTCCGCCACACGCTCGAGGAAAATTCCACAGACGGATTACAGGAAGTGGGTGCGAAATTGGCGCAATTCGCGGAAAAATTCGGCATGAAATTCGAATTCCGTGGGTTCTTCTGCAACAATTTGGCCGATCTCGAACCGTCGATACTCAATTTAGAAACAGAAACCGTCGCTATAAGCTCCATTTTCGAGCTCCACCGTCTACTTGCCCATTCAGGCGCGATCGAAAAAGTTCTAACCACAATCAAAGAACTGAACCCCAAAATCATCACTGTCGTGGAGCAGGTCGCGAACCACAACGGGCCGTCGTTCGTGGATCGATTCACTGAAGCACTACACTATTATTCAAGCTTATTCGATTCGTTAGAAGGGTCGCCAGCAGGGGAGGAGGATGTGGTGAGGTCAGAGGAGTATTTAGGGAGGCAAATCTACAACGTAGTGGCGTGTGAAGGTTCTGACCGTGTGGAGCGGCATGAAACGGTGGCGCAGTGGCGGAGCCGGTTGAGCTCGAGTGGGTTCGAGATGGTTCATTTGGGTTCTAACGCATTCAATCAGGCGAGTACTTTGCTGGCGGCTTTGTTCGGCGGTGGAAATGGGTACAGAGTGGAAGAGAATAATGGGAGTTTGACGTTGGGATGGCACACTCGGCCGCTCATAGCCACCTCAGCCTGGACGGTGGCCGGAGGCGGTGAGTCGACTCGACCGAGTTAA 1692 51.06 MKRDHTQQSSNPAAAGKPKKWAVEEEEDHDKHLAALGYNVRLSDMADVALKLEQLEMVMGLSEEDGISHLSSNTVHYNPSDVSSWVQSMLVELNTPLQSQGIIHDPVLAIAESTSFSVAAAFTNDSEYDLRAIPGVAAFPQIDSSNPRKRFKKSDSESLLVTASSSTSSSSSSEPSRSVVLVDSAETGVRLVHSLLACADAVDNNNLNLAEALLKHIRFLVEAQAGAMRKVAGYFAQALTYRIYRFYPPKPFDYLSSYTDLLQMHFYETSPYLKFAHFTANQAILESVGSASSIHVVDFNLQQGHQWPPLIQAFALRPGGPPAFHLTGVRHTLEENSTDGLQEVGAKLAQFAEKFGMKFEFRGFFCNNLADLEPSILNLETETVAISSIFELHRLLAHSGAIEKVLTTIKELNPKIITVVEQVANHNGPSFVDRFTEALHYYSSLFDSLEGSPAGEEDVVRSEEYLGRQIYNVVACEGSDRVERHETVAQWRSRLSSSGFEMVHLGSNAFNQASTLLAALFGGGNGYRVEENNGSLTLGWHTRPLIATSAWTVAGGGESTRPS 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15842873 15845001 - MELO3C020206.2.1 Cme06g01579 330728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01579 563 Gene3D - 28 93 IPR038088 -
Cme06g01579 563 ProSiteProfiles GRAS family profile. 182 552 IPR005202 -
Cme06g01579 563 SMART DELLA_2 30 103 - -
Cme06g01579 563 Pfam GRAS domain family 191 552 IPR005202 -
Cme06g01579 563 MobiDBLite consensus disorder prediction 1 26 - -
Cme06g01579 563 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 25 552 IPR005202 -
Cme06g01579 563 PANTHER DELLA PROTEIN RGL1 25 552 IPR030006 GO:0003712|GO:0005634
Cme06g01579 563 Pfam Transcriptional regulator DELLA protein N terminal 30 96 IPR021914 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01579 Cme-Chr6:15842873 Cme09g00942 Cme-Chr9:13183531 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41512 PF03514 GRAS 3.60E-120 CL0063 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01579 K14494 - csv:101203095 1013.45