Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01657 ATGGTTCAGCAGACAAATGCATCCAAATTGAGATGGGGGGAGCTTGAAGATGACGATGGGGATCTAGATTTTCTTCTTCCGCCAAAGCAAATTATCGGGCCAGACGAAAATGGGTTGAAGAAAATTGTTGAGTATCAGTTTAACGAAGATGGTAACAAGGTCAAAATCACAACGACAACTCGTACACGCAAGCTCGCCCATGCTCGCCTTAGTAAACATGCAATAGAGCGCCGATCTTGGGCCAAGTTTGGCGATGCTGTCCATGAAGATGTCGGCAGTCGCCTCACTATGGTCTCCACTGAGGAGATTCTTCTCGAGCGCCCTCGTGCTCCTGGTAGCAAACCAGAGGAGCCAAAGGTTGCTGGTGACCCGCTAGCTCAACTTGGAAAAGGTGGTGCTGTTCTTATGGTTTGTCGAACTTGTGGTAAAAAGGGTGACCACTGGACCTCAAGGTGCCCTTACAAGGACCTGGCACCACAAGCTGATGGATTGGATAAGCCTGTTGCACCAGAGACTACAGCTGCTGCTCCTGGTGCAACAAAGGGAGCATATGTTCCTCCAGGTATGAGAGCAGGGGCGGAGAGGACTGGAACTGACATGAGGCGTAGGAATGATGAAAACTCTGTTCGTGTTACCAACCTTTCAGAGGACACTAGAGAACCTGACTTGCTTGAGCTCTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCTGTTGATCAAAAGACTGGCATGAGCAGAGGATTTGGTTTTGTAAACTTTGTGAATCGTGAGGATGCACAAAGATCAATTAACAAGCTTAATGGATATGGTTACGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCAAGGGCGACTTAG 867 48.21 MVQQTNASKLRWGELEDDDGDLDFLLPPKQIIGPDENGLKKIVEYQFNEDGNKVKITTTTRTRKLAHARLSKHAIERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQADGLDKPVAPETTAAAPGATKGAYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRSINKLNGYGYDNLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17927272 17929430 - MELO3C023779.2.1 Cme06g01657 330806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01657 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676
Cme06g01657 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cme06g01657 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Cme06g01657 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 287 - -
Cme06g01657 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Cme06g01657 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743|GO:0005737|GO:0005852
Cme06g01657 288 Gene3D - 179 288 IPR012677 -
Cme06g01657 288 Pfam Eukaryotic translation initiation factor 3 subunit G 31 157 IPR024675 -
Cme06g01657 288 CDD eIF3G 37 156 IPR024675 -
Cme06g01657 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 287 - -
Cme06g01657 288 SMART rrm1_1 208 281 IPR000504 GO:0003723
Cme06g01657 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 275 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01657 Cme-Chr6:17927272 Cme12g02033 Cme-Chr12:25834091 2.55E-173 dispersed
Cme06g01657 Cme-Chr6:17927272 Cme01g02790 Cme-Chr1:34937065 5.61E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01657 K03248 - csv:101207022 550.051