Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01664 ATGCCGGAAGACACCGTTCCGATAGACTATGTAATGGAAGCCGCCTCTGGACCTCACTTCTCTGGCCTCCGACTCGATGGACGTCTCGCCTCTCCGCCGTCTTCCTCAACTTCCTCTCCGGCTCACCGCTCTTCTTTTTCCTCTTCCTTTGCACAGGTCGATACCAGCTCTCCCAGGCAGCCCTTTGTCATCGGTGTTTCTGGAGGTACCGCTTCTGGGAAGACGACGGTGTGTGACATGATTATCCAGCAACTTCATGATCACAGGGTTGTGCTGGTCAATCAGGACTCGTTTTACCGCGGGTTGACAGCTGAGGAACTAGAACGCGTACACGAGTATAACTTTGATCATCCTGATTCTTTTGACACGGAGCAGCTTGTAGATTGTATCGAGAAGCTAAAGAGTGGCCAACCTTACCACGTCCCAATTTATGATTTTAAAACTCATCAACGCTGTGTAGATAGTTTTCGACAGGTCAATGCCTCGAATGTTATCATCTTGGAAGGTATTTTGGTTTTCCATGACCAAAGAGTCCGCAATTTGATGAATATGAAGATATTTGTTGACACAGATCCTGATGTGAGGCTTGCTCGAAGAATTAGACGTGATACGGTAGAAAGGGGCAGGGACATTAACTCTGTTCTTGAACAGTATGCAAAGTTTGTAAAACCTGCTTTTGATGATTTCATTTTGCCATCAAAGAAGTATGCCGATGTGATCATACCACGTGGGGGTGATAACCATGTTGCAATTGATTTGATTGTGCAACACATCCACACTAAGTTAGGCCAGCATGACCTATGCAAAATATACCCCAATGTTACTGTCATTCAGTCGACATTTCAGATAAGAGGCATGCATACATTAATTCGAGACCGGGACATTTCAAAGCATGATTTTGTATTCTATTCAGATCGACTCATTCGTCTGGTTGTGGAGCATGGCCTTGGCCATTTGCCATTTACCGAAAAACAAGTGATCACTCCTACGGCATCTGTATACACTGGGGTTGATTTCTGCAAGAAACTATGTGGGGTATCCATTGTTCGGAGTGGTGAAAGCATGGAAAATGCATTGCGTGCATGTTGCAAAGGGATAAAAATTGGGAAGATTCTGATTCATCGCGAGGGAGATAATGGGAAGCAGCTGATATACGAGAAATTACCCAGTGATATATCAGAGCGACATGTCCTGCTCCTGGATCCTGTTCTTGCTACCGGCAACTCAGCCAATCAAGCAATTGATCTACTCATACAAAAGGGAGTTCCTGAAGCGCACATCATATTCCTCAACTTGATCTCTGCACCTGAGGGAATTCACTGTGTTTGCAAACGCTTCCCATCCTTGAAAATTGTCACTTCTGAGATTGATGTTGGATTGGATGACAGTTATCGTGTAATACCCGGCCTAGGTGAATTTGGTGATCGTTACTTCGGTACAGATGATTAG 1449 44.93 MPEDTVPIDYVMEAASGPHFSGLRLDGRLASPPSSSTSSPAHRSSFSSSFAQVDTSSPRQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAEELERVHEYNFDHPDSFDTEQLVDCIEKLKSGQPYHVPIYDFKTHQRCVDSFRQVNASNVIILEGILVFHDQRVRNLMNMKIFVDTDPDVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTASVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGKQLIYEKLPSDISERHVLLLDPVLATGNSANQAIDLLIQKGVPEAHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVGLDDSYRVIPGLGEFGDRYFGTDD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18167668 18177398 + MELO3C023784.2.1 Cme06g01664 330813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01664 482 CDD UMPK 63 261 IPR000764 -
Cme06g01664 482 MobiDBLite consensus disorder prediction 23 53 - -
Cme06g01664 482 Gene3D - 265 480 IPR029057 -
Cme06g01664 482 Pfam Phosphoribulokinase / Uridine kinase family 63 249 IPR006083 GO:0005524|GO:0016301
Cme06g01664 482 PANTHER URIDINE KINASE 16 479 - -
Cme06g01664 482 MobiDBLite consensus disorder prediction 30 53 - -
Cme06g01664 482 SUPERFAMILY PRTase-like 264 481 IPR029057 -
Cme06g01664 482 Pfam Uracil phosphoribosyltransferase 279 480 - -
Cme06g01664 482 PRINTS Uridine kinase signature 61 78 - -
Cme06g01664 482 PRINTS Uridine kinase signature 91 102 - -
Cme06g01664 482 PRINTS Uridine kinase signature 136 151 - -
Cme06g01664 482 PRINTS Uridine kinase signature 193 203 - -
Cme06g01664 482 PRINTS Uridine kinase signature 207 218 - -
Cme06g01664 482 PRINTS Uridine kinase signature 229 242 - -
Cme06g01664 482 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 16 479 IPR029930 GO:0004849|GO:0044206
Cme06g01664 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 254 IPR027417 -
Cme06g01664 482 TIGRFAM udk: uridine kinase 61 261 IPR000764 -
Cme06g01664 482 Gene3D - 57 264 IPR027417 -
Cme06g01664 482 CDD PRTases_typeI 338 453 IPR000836 -
Cme06g01664 482 ProSiteProfiles UvrC family, homology region profile. 167 250 IPR001162 GO:0009381
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01664 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101207261 920.228
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01088 Cme-Chr1:13685454 Cme06g01664 Cme-Chr6:18167668 0 dispersed
Cme02g01792 Cme-Chr2:24718314 Cme06g01664 Cme-Chr6:18167668 4.56E-12 dispersed
Cme06g01664 Cme-Chr6:18167668 Cme08g02442 Cme-Chr8:31293308 4.49E-17 dispersed
Cme06g01664 Cme-Chr6:18167668 Cme10g00321 Cme-Chr10:2103810 8.08E-16 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01606 . 33 189 PRT Gene Family AT1G80050 79.0 1.9e-66 248.8
Cme06g02603 . 32 167 PRT Gene Family AT1G80050 78.7 4.2e-58 221.1
Cme03g02097 . 108 257 PRT Gene Family AT1G80050 70.7 6.6e-56 213.8
Cme09g01640 . 30 210 PRT Gene Family AT1G80050 54.5 1.9e-47 185.7
Cme03g01606 . 1 148 PRT Gene Family AT5G11160 79.7 7.6e-63 236.9
Cme03g02097 . 84 223 PRT Gene Family AT5G11160 73.6 2.6e-55 211.8
Cme06g02603 . 10 147 PRT Gene Family AT5G11160 72.5 1.9e-53 205.7
Cme09g01640 . 8 164 PRT Gene Family AT5G11160 55.7 2.0e-42 169.1
Cme03g02097 . 79 260 PRT Gene Family AT1G27450 81.9 1.2e-80 296.2
Cme06g02603 . 6 167 PRT Gene Family AT1G27450 77.8 7.8e-69 256.9
Cme03g01606 . 11 183 PRT Gene Family AT1G27450 68.8 3.6e-66 248.1
Cme09g01640 . 7 210 PRT Gene Family AT1G27450 55.1 4.0e-57 218.0
Cme11g00452 . 110 594 PRT Gene Family AT2G16570 85.0 5.3e-241 830.5
Cme11g00452 . 109 594 PRT Gene Family AT4G34740 85.4 1.1e-241 832.8
Cme11g00452 . 114 567 PRT Gene Family AT4G38880 75.4 3.4e-197 684.9
Cme03g02097 . 79 260 PRT Gene Family AT1G27450 81.9 1.2e-80 296.2
Cme06g02603 . 6 167 PRT Gene Family AT1G27450 77.8 7.8e-69 256.9
Cme03g01606 . 11 183 PRT Gene Family AT1G27450 68.8 3.6e-66 248.1
Cme09g01640 . 7 210 PRT Gene Family AT1G27450 55.1 4.0e-57 218.0
Cme03g01606 . 33 189 PRT Gene Family AT1G80050 79.0 1.9e-66 248.8
Cme06g02603 . 32 167 PRT Gene Family AT1G80050 78.7 4.2e-58 221.1
Cme03g02097 . 108 257 PRT Gene Family AT1G80050 70.7 6.6e-56 213.8
Cme09g01640 . 30 210 PRT Gene Family AT1G80050 54.5 1.9e-47 185.7
Cme06g02603 . 6 99 PRT Gene Family AT4G22570 88.3 1.7e-44 175.3
Cme03g02097 . 83 175 PRT Gene Family AT4G22570 80.6 1.7e-39 158.7
Cme03g01606 . 11 100 PRT Gene Family AT4G22570 77.8 4.5e-37 150.6
Cme09g01640 . 6 124 PRT Gene Family AT4G22570 63.9 4.5e-37 150.6
Cme06g02603 . 7 98 PRT Gene Family AT4G12440 88.0 2.1e-41 164.9
Cme03g02097 . 79 174 PRT Gene Family AT4G12440 79.2 3.8e-38 154.1
Cme03g01606 . 1 148 PRT Gene Family AT5G11160 79.7 7.6e-63 236.9
Cme03g02097 . 84 223 PRT Gene Family AT5G11160 73.6 2.6e-55 211.8
Cme06g02603 . 10 147 PRT Gene Family AT5G11160 72.5 1.9e-53 205.7
Cme09g01640 . 8 164 PRT Gene Family AT5G11160 55.7 2.0e-42 169.1
Cme03g01066 . 20 205 PRT Gene Family AT1G71750 62.9 4.6e-67 251.1
Cme01g01088 . 16 468 PRT Gene Family AT1G55810 85.7 1.9e-225 778.5
Cme06g01664 . 19 482 PRT Gene Family AT1G55810 73.5 1.0e-199 693.0
Cme01g01088 . 65 467 PRT Gene Family AT3G27440 77.2 1.5e-184 642.5
Cme06g01664 . 80 482 PRT Gene Family AT3G27440 75.2 2.5e-179 625.2
Cme06g01664 . 1 482 PRT Gene Family AT3G27190 86.1 2.5e-247 851.3
Cme01g01088 . 3 467 PRT Gene Family AT3G27190 74.1 2.5e-207 718.4
Cme08g02442 . 7 229 PRT Gene Family AT3G53900 77.6 2.7e-103 372.1
Cme01g01088 . 1 468 PRT Gene Family AT4G26510 83.8 2.2e-232 801.6
Cme06g01664 . 11 482 PRT Gene Family AT4G26510 75.2 3.4e-209 724.5
Cme06g01664 . 1 482 PRT Gene Family AT5G40870 86.3 2.7e-246 847.8
Cme01g01088 . 44 470 PRT Gene Family AT5G40870 80.1 5.6e-207 717.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01664 Cme_Chr06 FPKM 16.155993 14.826786 37.745701 32.594742 37.076023 37.127914 31.433401 11.493705 15.868039 13.442289