Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01685 GCTCCACCTTCCAGATTATATATATACTACTTTCCTTCTTTTTCCCCCATTAAATATCCCCTATCCCTCTCTACTTTCTCTTTTATATCTTCAAAATCCCTTTACCCCCAAATTTCTCTCTCTCGAGACTGCTTCTTCCCTTTTTATGCTTCCCTTCTGCCATTGCTCTTCTTCTTCAAAATGCGGATGAGTTGTAACGGTTGCAGAGTCCTTCGCAAAGGTTGTAGTGAAAATTGCAGTATTCGTCCTTGTTTGCAGTGGATCAAGACTCCCGAGTCTCAGGCTAATGCTACCGTTTTTCTTGCCAAGTTTTACGGCCGTGCTGGACTTATGAATCTCATCAACGCTGGTCCTGATCATCTCCGTCCTGCCATTTTTAGATCTCTTCTCTACGAGGCTTGTGGAAGGATTGTGAATCCGATTTACGGGTCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAGCTTTGTCAAGCGGCTGTTGAGGCCGTACTTAAAGGTGCTCCGATCACGCCGATCAACTCCGAGACAGCGGCTACGGGCGATGGACCGCCCTTGAAAGCCTACGACATACGTCACGTTTCCAAGGATGAAAACTCCGTAGCGTCCAACGATGGTGGAGTCATTCGGCCAGTCAAGACGCGGTGCCGGTTCAAGCGGTCGTCTGCGAAGGCGAAAGCGAGTAAAGGAATCGCCTCCACCGTTGTTGATGAGTCAACTCGACCGCTCTGCTCTACCGAGTTGAACAGGTCGTCGAGTGGTGAGTCGTCGTTGAGTCACCAATCAGATTCGCGGCATCTGGAGAACGAGAGTAAAGAAACGGAGAGCATGATTTCAGTGGAGACGGCGGAGGTTTCTCCTCCTTGTCCGGTGCAGTCGGTTTTGTTCCGATCGGAATCAACGGGGCGCGAGAGCGTTGCAGTGCCAATTCCGCGAAGTGAATTAGCTCTGGAATTAACCCTGGGGATGGAGCCGGTGTTACGTGCCCAGCACGTGATTCCAATGAAGAAACGAAAGATAGAAACCGACGTTGGGTTGAGGCCCAAAAACGAGACGTGCAATACTGTTTTAGGCCTTGATTTTGCAGCCTGA 1089 49.86 APPSRLYIYYFPSFSPIKYPLSLSTFSFISSKSLYPQISLSRDCFFPFYASLLPLLFFFKMRMSCNGCRVLRKGCSENCSIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSETAATGDGPPLKAYDIRHVSKDENSVASNDGGVIRPVKTRCRFKRSSAKAKASKGIASTVVDESTRPLCSTELNRSSSGESSLSHQSDSRHLENESKETESMISVETAEVSPPCPVQSVLFRSESTGRESVAVPIPRSELALELTLGMEPVLRAQHVIPMKKRKIETDVGLRPKNETCNTVLGLDFAA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18625694 18627658 - MELO3C023802.2.1 Cme06g01685 330834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01685 362 Pfam Lateral organ boundaries (LOB) domain 64 163 IPR004883 -
Cme06g01685 362 MobiDBLite consensus disorder prediction 241 283 - -
Cme06g01685 362 MobiDBLite consensus disorder prediction 260 276 - -
Cme06g01685 362 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 61 358 - -
Cme06g01685 362 MobiDBLite consensus disorder prediction 241 259 - -
Cme06g01685 362 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 61 358 - -
Cme06g01685 362 ProSiteProfiles LOB domain profile. 63 169 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01685 Cme-Chr6:18625694 Cme10g00257 Cme-Chr10:1686542 4.12E-66 dispersed
Cme06g01685 Cme-Chr6:18625694 Cme02g01743 Cme-Chr2:24424860 6.50E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41515 PF03195 LOB 2.60E-24 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01685 - - csv:101208245 604.749