Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01720 ATGCCATTCTTCAACCTTCACCCTTCGTCTCCCTTTCTTCTCTTCTTCTTCTTCTTTCAGCTTCCTGTTTTTGCTATCTTCTCTGATCGTGATTACAATATTCTGATTCGGGTTAAAACCTCTTATCTCCATGATCCCGATGGCTCTATGAACAATTGGGTTCCAAATCAAGCTCACAATGCTTGTAACTGGACTGGCATCACCTGCGATCCCACTAATTCCTCTGTTCTGTCCATCGATCTCAGTAATTCCGGTTTCGTTGGCGGATTCCCCTTCGTTTTTTGTCGGATTCCCACTCTTAAATCCCTTTCTATCTCCAACACTAGCCTTAATGGAACTTTACTCTCTCCTTCCTTCTCTCTTTGTTCTCACTTGCAACTCCTCAATCTTTCCAGTAACCTTCTCGTTGGTACTTTGCCGGACTTTTCTTCTGGTTTCAAACAACTACAAACTCTCGATCTCTCTTCCAACAATTTCACCGGTGGAATTCCTCATAGCTTTGGGGGGTTATCGGCGCTGAAAGTGCTCCGTTTGTCGCAGAATCTACTCGACGGCTCATTACCTTCTGTTCTTGGAAATCTCAGTGAGCTAACTGAAATGGCCATCGCTTATAATCCGTTTAAACCCAGTCGGTTACCGCCTGAATTCGGCAACCTGACGAAACTTGTAAATATGTTTTTACCGTCTTCGAAACTCATTGGACCCATTCCTGATTCCATTGGAAACCTTGCTCTGCTTAGTAATCTCGATTTATCTACCAATTCAATTTCGGGATCGATCCCGGATTCAATCGGTGGATTAAGAAGTATAGAGAGCATTCGACTCTATAACAACCAAATCTCCGGGGAGTTGCCAGAGAGCATCGGAAATTTGACTACTTTGTTTTCCCTGGACATATCGCAGAATAGTCTCACCGGGAAATTGTCGGAGAAAATTGCTGCTTTGCCTCTTCAGTCTCTGCATCTCAATGACAATTTCCTTGAAGGCGAGGTTCCCGAGACCTTAGCTTCTAACAAAAATCTTTTGAGTTTGAAACTCTTTAACAATAGCTTTTCCGGCAAACTTCCTTGGAATTTGGGTCTAAATTCTTATTTGAATGTGTTTGATGTCTCTTCCAACAATTTCATGGGCGAAATTCCGAAATTTCTCTGCCATGGAAATCAACTTCAAAGAATCGTTTTATTCAATAATCATTTCTCAGGAAGTTTTCCAGAATCGTACGGTGGTTGCGATTCTCTGCTTTATGTCAGAATTGAGAACAATCAACTTTCCGGGCAGATACCGGACTCGTTCTGGAATCTCTCTGGACTTACTTATATTCGGATATCAGAAAATCGATTTGAGGGCTCCATTCCGCTTGCGATAAGTGGCATTCGTTATCTTCAAGATTTGGTGATTTCCGGCAACTTCTTCTCCGGCCAATTACCGAAGGAGATTTGCAAACTGCAAGAGCTCGTCCGGTTAGACGTCAGCAGGAATAAATTATCCGGGGGAGTTCCTTCATGTATAACCGAGTTGAAGCAACTTCAAAAGCTCGACCTCCAAGAAAACATGTTCGCGGGAGAAATACCCAAGTTGGTTAACACATGGAAAGAGTTAACCGAGTTGAATCTGTCTCACAATCAATTCACCGGTGAGATTCCGCCTCAACTCGGAGATTTACCAGTTCTAAAATATTTAGATCTCTCCTCAAATTTACTCTCCGGCGAAATCCCCGAGGAATTAACGAAGCTAAAACTTGGACAGTTCAATTTTTCCGACAATAAATTGACCGGAGAAGTTCCTTCCGGCTTCGACAACGAACTATTTGTCAATAGCCTAATGGGTAATCCCGGTCTATGTAGCCCGGATTTGAAGCTGCTGAACCGGTGTCCCAAATCCAAATCCATAAGTTTTTATATTGTTATTGTTCTGTCCCTTATTGCTTTCGTTCTCATCGGGTCTCTCATTTGGGTAGTCAAATTTAGGATGAATCTCTTCAAGAAATCGAAATCTTCATGGATGGTGACTAAGTTCCAACGTGTTGGATTCGATGAAGAAGATGTAATTCCTCATTTAACCAAAGCAAATATTATTGGATCGGGCGGGTCCAGCACTGTGTTCAAGGTGGATTTGAAAATGGGGCAGACTGTCGCTGTGAAGAGTCTCTGGAGTGGCCACAACAAATTGGATTTGGAATCGATTTTCCAATCAGAAGTTGAGACATTGGGTCGGATTCGCCATGCCAATATTGTGAAGTTGCTCTTCAGTTGCAGCAATGGAGAAGGAAGTAAAATTCTTGTGTACGAATACATGGAGAATGGGAGTTTGGGAGATGCTCTACATGAACACAAATCCCAAACTTTATCTGATTGGTCCAAACGACTTGACATTGCTGTTGGAGCAGCCCAAGGATTAGCTTACTTACACCATGATTGTGTTCCTCCAATAATCCATCGTGATGTTAAGAGCAACAACATTCTCTTGGATGAAGAATTCCACCCTCGAGTGGCCGACTTTGGTTTAGCCAAGACGATGCAGCGCCAAGGAGAGGCAGATGATGGCAGTGCCATGTCTCGTATTGCTGGCTCCTATGGTTACATTGCTCCTGAGTATGGGTACACAATGAAGGTGACAGAGAAGAGCGATGTGTATAGCTTTGGAGTAGTATTGATGGAGTTAGTGACAGGGAAGCGACCAAACGATGCATGCTTTGGAGAGAACAAAGATATTGTGAAATGGGTGACAGAGATTTCATTGTCAGAAGGAGAAGGAGAGAAAGGATTAAGTTTAGACGAGATTGTTGATGAAAGGTTGGATCCGAAGACATGTGTAGCAGAAGAGATAGTAAAGATCTTGGATGTGGCAATTCTTTGTACCTCTGCTTTGCCTCTCAATAGACCATCAATGAGAAGAGTGGTTGAGCTGATAAAGGACACCAAATTGCCTCATTCCAAGTCGTGA 2943 42.88 MPFFNLHPSSPFLLFFFFFQLPVFAIFSDRDYNILIRVKTSYLHDPDGSMNNWVPNQAHNACNWTGITCDPTNSSVLSIDLSNSGFVGGFPFVFCRIPTLKSLSISNTSLNGTLLSPSFSLCSHLQLLNLSSNLLVGTLPDFSSGFKQLQTLDLSSNNFTGGIPHSFGGLSALKVLRLSQNLLDGSLPSVLGNLSELTEMAIAYNPFKPSRLPPEFGNLTKLVNMFLPSSKLIGPIPDSIGNLALLSNLDLSTNSISGSIPDSIGGLRSIESIRLYNNQISGELPESIGNLTTLFSLDISQNSLTGKLSEKIAALPLQSLHLNDNFLEGEVPETLASNKNLLSLKLFNNSFSGKLPWNLGLNSYLNVFDVSSNNFMGEIPKFLCHGNQLQRIVLFNNHFSGSFPESYGGCDSLLYVRIENNQLSGQIPDSFWNLSGLTYIRISENRFEGSIPLAISGIRYLQDLVISGNFFSGQLPKEICKLQELVRLDVSRNKLSGGVPSCITELKQLQKLDLQENMFAGEIPKLVNTWKELTELNLSHNQFTGEIPPQLGDLPVLKYLDLSSNLLSGEIPEELTKLKLGQFNFSDNKLTGEVPSGFDNELFVNSLMGNPGLCSPDLKLLNRCPKSKSISFYIVIVLSLIAFVLIGSLIWVVKFRMNLFKKSKSSWMVTKFQRVGFDEEDVIPHLTKANIIGSGGSSTVFKVDLKMGQTVAVKSLWSGHNKLDLESIFQSEVETLGRIRHANIVKLLFSCSNGEGSKILVYEYMENGSLGDALHEHKSQTLSDWSKRLDIAVGAAQGLAYLHHDCVPPIIHRDVKSNNILLDEEFHPRVADFGLAKTMQRQGEADDGSAMSRIAGSYGYIAPEYGYTMKVTEKSDVYSFGVVLMELVTGKRPNDACFGENKDIVKWVTEISLSEGEGEKGLSLDEIVDERLDPKTCVAEEIVKILDVAILCTSALPLNRPSMRRVVELIKDTKLPHSKS 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19446849 19450342 + MELO3C014948.2.1 Cme06g01720 330869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01720 980 SUPERFAMILY Protein kinase-like (PK-like) 679 969 IPR011009 -
Cme06g01720 980 Gene3D Ribonuclease Inhibitor 211 315 IPR032675 -
Cme06g01720 980 Gene3D Ribonuclease Inhibitor 28 210 IPR032675 -
Cme06g01720 980 Pfam Leucine rich repeat 148 206 IPR001611 GO:0005515
Cme06g01720 980 ProSitePatterns Protein kinases ATP-binding region signature. 692 714 IPR017441 GO:0005524
Cme06g01720 980 Pfam Protein kinase domain 688 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01720 980 ProSitePatterns Serine/Threonine protein kinases active-site signature. 810 822 IPR008271 GO:0004672|GO:0006468
Cme06g01720 980 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 17 975 - -
Cme06g01720 980 SUPERFAMILY L domain-like 378 619 - -
Cme06g01720 980 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2 17 975 - -
Cme06g01720 980 SMART serkin_6 686 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01720 980 Gene3D Ribonuclease Inhibitor 316 632 IPR032675 -
Cme06g01720 980 ProSiteProfiles Protein kinase domain profile. 686 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme06g01720 980 Gene3D Transferase(Phosphotransferase) domain 1 765 979 - -
Cme06g01720 980 Pfam Leucine Rich repeats (2 copies) 532 571 IPR025875 -
Cme06g01720 980 SUPERFAMILY RNI-like 78 382 - -
Cme06g01720 980 Pfam Leucine rich repeat N-terminal domain 29 70 IPR013210 -
Cme06g01720 980 Gene3D Phosphorylase Kinase; domain 1 661 764 - -
Cme06g01720 980 SMART LRR_typ_2 170 194 IPR003591 -
Cme06g01720 980 SMART LRR_typ_2 554 578 IPR003591 -
Cme06g01720 980 SMART LRR_typ_2 146 169 IPR003591 -
Cme06g01720 980 SMART LRR_typ_2 267 291 IPR003591 -
Cme06g01720 980 SMART LRR_typ_2 482 506 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01761 Cme-Chr3:26123660 Cme06g01720 Cme-Chr6:19446849 0 dispersed
Cme06g01720 Cme-Chr6:19446849 Cme08g00270 Cme-Chr8:1743543 0 dispersed
Cme06g01720 Cme-Chr6:19446849 Cme12g01317 Cme-Chr12:21222820 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64966 PF00069 Pkinase 9.60E-43 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01720 - - csv:101219140 1783.84