Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01725 ATGGGTTTTGATGATTTTTCTAAAACAGGGTTGGTGTTGGGATTAGGGCTCTCAGAATTAGCTGACGATCAAAGGACGACATTGAAGAAGAAGCCTGCACCTTGCTCCTCCAGTTCACTTGATTTCGAGCCTTGTGTTTTGACTTTGGGATTTTCCGGTGGTGGTGGCGACCCTCATCGGAAAGTTATTGATCATGAGGGTGTTCGTCATTTATATCGCCAAACATCCCCTCATAGCAGCGCTGTTTGTTCTTCCTTCTCGGGTAAGGTTAAAAGAGAGAGAGATCTGAGCAGTGAAGAAGTTGAACTGGAGAGAGTTTGTTGGAGAGTTAGTGATGAAGATGACGATGGTTGTAATAATACTAGAAAGAAACTTAGACTCTCTAAACAACAATCCGCTCTCTTGGAAGAAAGTTTCAAACAGAATAGCACGCTCAATCCTAAGCAAAAACAAGGCTTAGCAAGACAGCTAAATCTACTGCCACGACAAGTTGAAGTATGGTTTCAGAATAGGAGAGCTCGAACAAAAGTGAAACAAACGGAAGTAGATTGTGAGTTGTTGAAGAAGTGTTGTGAGACGTTGACGGATGAAAATAGAAGATTACAAAAGGAGGTTCAAGAATTGAAGGCAATAAAGCTGGCAAAACCGGTATACATGCAGATGTCGGGGGCGACATTAACCATATGCCCCTCATGCGAAAGGGTGGGTACTGGCGGCCATGGTGGTGTCGCGGACGAAAGGGTTGTAGAGCTAAATTGGCGATTAGACAAATTTAATTTCGAAAAGTTAGAATTCGAAGAACTCTGA 807 43.0 MGFDDFSKTGLVLGLGLSELADDQRTTLKKKPAPCSSSSLDFEPCVLTLGFSGGGGDPHRKVIDHEGVRHLYRQTSPHSSAVCSSFSGKVKRERDLSSEEVELERVCWRVSDEDDDGCNNTRKKLRLSKQQSALLEESFKQNSTLNPKQKQGLARQLNLLPRQVEVWFQNRRARTKVKQTEVDCELLKKCCETLTDENRRLQKEVQELKAIKLAKPVYMQMSGATLTICPSCERVGTGGHGGVADERVVELNWRLDKFNFEKLEFEEL 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19552711 19554706 - MELO3C014944.2.1 Cme06g01725 330874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01725 268 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677
Cme06g01725 268 Pfam Homeodomain 122 176 IPR001356 GO:0003677
Cme06g01725 268 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 14 246 - -
Cme06g01725 268 SUPERFAMILY Homeodomain-like 112 179 IPR009057 -
Cme06g01725 268 Gene3D - 117 183 - -
Cme06g01725 268 SMART HOX_1 120 182 IPR001356 GO:0003677
Cme06g01725 268 CDD homeodomain 122 179 IPR001356 GO:0003677
Cme06g01725 268 Pfam Homeobox associated leucine zipper 178 211 IPR003106 GO:0006355|GO:0043565
Cme06g01725 268 PANTHER - 14 246 - -
Cme06g01725 268 Coils Coil 184 211 - -
Cme06g01725 268 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
Cme06g01725 268 SMART halz 178 221 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01725 Cme-Chr6:19552711 Cme06g02551 Cme-Chr6:32504663 2.43E-55 dispersed
Cme07g00248 Cme-Chr7:1611018 Cme06g01725 Cme-Chr6:19552711 5.15E-20 dispersed
Cme06g01725 Cme-Chr6:19552711 Cme08g00681 Cme-Chr8:4509619 5.71E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41517 PF00046 Homeodomain 8.60E-16 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01725 K09338 - csv:101205848 481.485