Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme06g01749 ATGAATGACGCAGATGTTTCCAAGCAGATCCAGCAGATGGTCAGGTTCATCCGCCAGGAAGCCGAGGAAAAGGCCAACGAGATCTCCGTCTCTGCTGAAGAAGAATTCAATATTGAAAAGTTGCAGCTGGTTGAGGCAGAGAAGAAGAAGATCAGGCAAGAGTACGAGAAGAAGGAGAAGCAAGTTGAAATCCGGAAGAAGATCGAGTACTCCATGCAGCTCAATGCTTCTCGGATCAAAGTTCTGCAAGCTCAGGATGATGTTGTAAACAATATGAAAGAGGCAGCATCAAAGGAGCTTCTCAGTGTAAGCCAAAATGAACATGTCTACAAAAATCTTTTGAAGGATCTCATTGTTCAGAGCTTGCTTCGACTGAAAGAGCCAGCCGTTTTATTGCGATGCCGCAAAAGTGACGTCCATTTGGTGGAGTCTGTGCTGGGTTCAGCAGCTGTTGAATATGCAGAGAAAGCAAAAGTTCATGAGCCAGAGATCATTGTTGACCATGTCCATCTTCCACCCGGTCCAAGTCATCACCATCATCACGGTCCTTCTTGCTCTGGAGGTGTGGTCTTGGCATCTCGAGATGGGAAGATTGTCTGTGAGAACACCCTTGATGCTAGATTGGATGTTGTGTTCCGTAAAAAACTTCCAGAGATCCGAAAAAGCCTTTTCAGTCAAGTTGCTGCATAA 690 45.65 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVEIRKKIEYSMQLNASRIKVLQAQDDVVNNMKEAASKELLSVSQNEHVYKNLLKDLIVQSLLRLKEPAVLLRCRKSDVHLVESVLGSAAVEYAEKAKVHEPEIIVDHVHLPPGPSHHHHHGPSCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKSLFSQVAA 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20096497 20100308 - MELO3C014920.2.1 Cme06g01749 330898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme06g01749 229 Coils Coil 38 61 - -
Cme06g01749 229 Gene3D - 1 62 - -
Cme06g01749 229 SUPERFAMILY V-type ATPase subunit E-like 87 224 - -
Cme06g01749 229 PANTHER ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED 1 229 IPR002842 GO:0033178|GO:0046961|GO:1902600
Cme06g01749 229 Hamap V-type proton ATPase subunit E [atpE]. 8 225 IPR002842 GO:0033178|GO:0046961|GO:1902600
Cme06g01749 229 Gene3D - 92 228 IPR038495 -
Cme06g01749 229 PANTHER V-TYPE PROTON ATPASE SUBUNIT E-LIKE 1 229 - -
Cme06g01749 229 Pfam ATP synthase (E/31 kDa) subunit 16 224 IPR002842 GO:0033178|GO:0046961|GO:1902600
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme06g01749 K02150 ATPeV1E, ATP6E; V-type H+-transporting ATPase subunit E - csv:101217221 397.512
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g01758 . 73 886 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.4
Cme01g01362 . 70 873 Primary Pumps ATPases(2) AT2G28520 63.2 1.6e-294 1008.8
Cme03g01909 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.3 4.2e-215 745.0
Cme01g01362 . 66 878 Primary Pumps ATPases(2) AT2G21410 75.8 0.0e+00 1234.2
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT2G21410 62.5 2.3e-298 1021.5
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT2G21410 76.9 1.2e-238 823.2
Cme01g01362 . 68 878 Primary Pumps ATPases(2) AT4G39080 77.1 0.0e+00 1240.3
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT4G39080 63.4 2.6e-297 1018.1
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT4G39080 77.8 1.6e-238 822.8
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme03g01900 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cme06g00383 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme06g00382 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme03g01900 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.2e-74 274.2
Cme06g00383 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00382 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00383 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme06g00382 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme03g01900 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cme03g01656 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.7 2.3e-70 262.3
Cme04g00385 . 7 160 Primary Pumps ATPases(2) AT2G25610 83.8 5.7e-61 231.1
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.8e-60 227.6
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme03g01656 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 1.9e-71 265.8
Cme04g00385 . 1 160 Primary Pumps ATPases(2) AT4G32530 73.7 8.7e-64 240.4
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.2 0.0e+00 1666.0
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1669.8
Cme12g00230 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.8 0.0e+00 1319.7
Cme02g00511 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.3e-57 219.2
Cme01g01238 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.3e-268 920.2
Cme04g02533 . 2 109 Primary Pumps ATPases(2) AT3G01390 79.6 3.6e-37 151.0
Cme09g01067 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.0 5.3e-181 630.6
Cme05g00306 . 63 323 Primary Pumps ATPases(2) AT3G58730 81.6 8.4e-117 416.8
Cme04g02122 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.2
Cme03g01900 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.2e-74 274.2
Cme06g00383 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00382 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme01g01238 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.7 1.1e-269 925.6
Cme06g01749 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 6.5e-66 247.3
Cme01g01238 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.1e-266 912.5
Cme11g01758 . 73 886 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.4
Cme01g01362 . 70 873 Primary Pumps ATPases(2) AT2G28520 63.2 1.6e-294 1008.8
Cme03g01909 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.3 4.2e-215 745.0
Cme04g01965 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 6.1e-192 666.8
Cme06g01749 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.7e-90 327.0
Cme01g02735 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.1 0.0e+00 1172.1
Cme01g01238 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.3e-268 920.2
Cme01g01238 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.7 1.1e-269 925.6
Cme01g01238 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.1e-266 912.5
Cme09g01067 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.0 5.3e-181 630.6
Cme05g00306 . 63 323 Primary Pumps ATPases(2) AT3G58730 81.6 8.4e-117 416.8
Cme06g01749 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.7e-90 327.0
Cme06g01749 . 1 223 Primary Pumps ATPases(2) AT3G08560 69.5 6.5e-76 280.8
Cme06g01749 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 6.5e-66 247.3
Cme02g00511 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.3e-57 219.2
Cme04g02533 . 2 109 Primary Pumps ATPases(2) AT3G01390 79.6 3.6e-37 151.0
Cme04g02122 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.2
Cme11g01758 . 73 886 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.4
Cme01g01362 . 70 873 Primary Pumps ATPases(2) AT2G28520 63.2 1.6e-294 1008.8
Cme03g01909 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.3 4.2e-215 745.0
Cme01g01362 . 66 878 Primary Pumps ATPases(2) AT2G21410 75.8 0.0e+00 1234.2
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT2G21410 62.5 2.3e-298 1021.5
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT2G21410 76.9 1.2e-238 823.2
Cme01g01362 . 68 878 Primary Pumps ATPases(2) AT4G39080 77.1 0.0e+00 1240.3
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT4G39080 63.4 2.6e-297 1018.1
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT4G39080 77.8 1.6e-238 822.8
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme06g00383 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme06g00382 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme03g01900 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.8e-60 227.6
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme03g01900 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cme06g00383 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme06g00382 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme03g01900 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.2e-74 274.2
Cme06g00383 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00382 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme03g01656 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 1.9e-71 265.8
Cme04g00385 . 1 160 Primary Pumps ATPases(2) AT4G32530 73.7 8.7e-64 240.4
Cme03g01656 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.7 2.3e-70 262.3
Cme04g00385 . 7 160 Primary Pumps ATPases(2) AT2G25610 83.8 5.7e-61 231.1
Cme04g01965 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 5.3e-199 690.3
Cme04g01965 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 6.1e-192 666.8
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.2 0.0e+00 1666.0
Cme12g00230 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.8 0.0e+00 1319.7
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1669.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004110 2 0 1 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme06g01749 Cme_Chr06 FPKM 25.802301 29.223461 29.393587 30.003759 8.366461 8.838131 9.176864 11.815966 11.656852 10.849211